Literature DB >> 28884762

Proteins at air-water and oil-water interfaces in an all-atom model.

Yani Zhao1, Marek Cieplak.   

Abstract

We study the behavior of five proteins at the air-water and oil-water interfaces by all-atom molecular dynamics. The proteins are found to get distorted when pinned to the interface. This behavior is consistent with the phenomenological way of introducing the interfaces in a coarse-grained model through a force that depends on the hydropathy indices of the residues. Proteins couple to the oil-water interface stronger than to the air-water one. They diffuse slower at the oil-water interface but do not depin from it, whereas depinning events are observed at the other interface. The reduction of the disulfide bonds slows the diffusion down.

Entities:  

Year:  2017        PMID: 28884762     DOI: 10.1039/c7cp03829a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  2 in total

1.  Using extensional flow to reveal diverse aggregation landscapes for three IgG1 molecules.

Authors:  Leon F Willis; Amit Kumar; John Dobson; Nicholas J Bond; David Lowe; Richard Turner; Sheena E Radford; Nikil Kapur; David J Brockwell
Journal:  Biotechnol Bioeng       Date:  2018-02-04       Impact factor: 4.530

2.  Need for Speed: Examining Protein Behavior during CryoEM Grid Preparation at Different Timescales.

Authors:  David P Klebl; Molly S C Gravett; Dimitrios Kontziampasis; David J Wright; Robin S Bon; Diana C F Monteiro; Martin Trebbin; Frank Sobott; Howard D White; Michele C Darrow; Rebecca F Thompson; Stephen P Muench
Journal:  Structure       Date:  2020-08-18       Impact factor: 5.006

  2 in total

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