Literature DB >> 28884065

Molecular characterizations of somatic hybrids developed between Pleurotus florida and Lentinus squarrosulus through inter-simple sequence repeat markers and sequencing of ribosomal RNA-ITS gene.

Pijush Mallick1,2, Shruti Chattaraj1, Samir Ranjan Sikdar1.   

Abstract

The 12 pfls somatic hybrids and 2 parents of Pleurotus florida and Lentinus squarrosulus were characterized by ISSR and sequencing of rRNA-ITS genes. Five ISSR primers were used and amplified a total of 54 reproducible fragments with 98.14% polymorphism among all the pfls hybrid populations and parental strains. UPGMA-based cluster exhibited a dendrogram with three major groups between the parents and pfls hybrids. Parent P. florida and L. squarrosulus showed different degrees of genetic distance with all the hybrid lines and they showed closeness to hybrid pfls 1m and pfls 1h, respectively. ITS1(F) and ITS4(R) amplified the rRNA-ITS gene with 611-867 bp sequence length. The nucleotide polymorphisms were found in the ITS1, ITS2 and 5.8S rRNA region with different number of bases. Based on rRNA-ITS sequence, UPGMA cluster exhibited three distinct groups between L. squarrosulus and pfls 1p, pfls 1m and pfls 1s, and pfls 1e and P. florida.

Entities:  

Keywords:  ISSR; Mushroom somatic hybrid; Polymorphism; rRNA-ITS gene

Year:  2017        PMID: 28884065      PMCID: PMC5587416          DOI: 10.1007/s13205-017-0931-2

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  24 in total

1.  Sexuality and genetic identity in the Agaricus section Arvenses.

Authors:  L Calvo-Bado; R Noble; M Challen; A Dobrovin-Pennington; T Elliott
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

Review 2.  Ribosomal ITS sequences and plant phylogenetic inference.

Authors:  I Alvarez; J F Wendel
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

3.  Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data.

Authors:  Ari Jumpponen
Journal:  Microb Ecol       Date:  2007-02       Impact factor: 4.552

Review 4.  Ribosomal DNA: molecular evolution and phylogenetic inference.

Authors:  D M Hillis; M T Dixon
Journal:  Q Rev Biol       Date:  1991-12       Impact factor: 4.875

5.  A specific oligonucleotide of the 5S rDNA spacer and species-specific elements identify symmetric somatic hybrids between Solanum tuberosum and S. pinnatisectum.

Authors:  C Zanke; N Borisjuk; B Ruoss; L Schilde-Rentschler; H Ninnemann; V Hemleben
Journal:  Theor Appl Genet       Date:  1995-04       Impact factor: 5.699

6.  Genetic diversity and interrelationships among common European Suillus species based on ribosomal DNA sequences.

Authors:  S Manian; S Sreenivasaprasad; G D Bending; P R Mills
Journal:  FEMS Microbiol Lett       Date:  2001-10-16       Impact factor: 2.742

7.  Intersimple sequence repeats (ISSR) molecular fingerprinting markers for authenticating populations of Dendrobium officinale Kimura et Migo.

Authors:  Jie Shen; Xiaoyu Ding; Dongyang Liu; Ge Ding; Jia He; Xuexia Li; Feng Tang; Bihai Chu
Journal:  Biol Pharm Bull       Date:  2006-03       Impact factor: 2.233

8.  Determination of the anamorph of Cordyceps sinensis inferred from the analysis of the ribosomal DNA internal transcribed spacers and 5.8S rDNA.

Authors:  Yue Qin Chen; N Wang; L -H. Qu; T -H. Li; W -M. Zhang
Journal:  Biochem Syst Ecol       Date:  2001-06       Impact factor: 1.381

9.  Three nonorthologous ITS1 types are present in a polypore fungus Trichaptum abietinum.

Authors:  Kwan Soo Ko; Hack Sung Jung
Journal:  Mol Phylogenet Evol       Date:  2002-05       Impact factor: 4.286

10.  The International Nucleotide Sequence Database Collaboration.

Authors:  Ilene Karsch-Mizrachi; Yasukazu Nakamura; Guy Cochrane
Journal:  Nucleic Acids Res       Date:  2011-11-12       Impact factor: 16.971

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