| Literature DB >> 28883621 |
Margaret Carrel1,2, Chang Zhao3, Dipendra Thapaliya4,5, Patrick Bitterman3, Ashley E Kates6, Blake M Hanson7, Tara C Smith4,5.
Abstract
The role of household meat handling and consumption in the transfer of Staphylococcus aureus (S. aureus) from livestock to consumers is not well understood. Examining the similarity of S. aureus colonizing humans and S. aureus in meat from the stores in which those individuals shop can provide insight into the role of meat in human S. aureus colonization. S. aureus isolates were collected from individuals in rural and urban communities in Iowa (n = 3347) and contemporaneously from meat products in stores where participants report purchasing meat (n = 913). The staphylococcal protein A (spa) gene was sequenced for all isolates to determine a spa type. Morisita indices and Permutational Multivariate Analysis of Variance Using Distance Matrices (PERMANOVA) were used to determine the relationship between spa type composition among human samples and meat samples. spa type composition was significantly different between households and meat sampled from their associated grocery stores. spa types found in meat were not significantly different regardless of the store or county in which they were sampled. spa types in people also exhibit high similarity regardless of residential location in urban or rural counties. Such findings suggest meat is not an important source of S. aureus colonization in shoppers.Entities:
Mesh:
Year: 2017 PMID: 28883621 PMCID: PMC5589955 DOI: 10.1038/s41598-017-11423-6
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Sample size and S. aureus positivity for samples in Johnson and Keokuk Counties.
| Human | Meat | |||||
|---|---|---|---|---|---|---|
| Sampling Locations (n=) | Swabs (n=) |
| Sampling Locations (n=) | Samples (n=) |
| |
| Johnson County | 49 | 6189 | 1721 (27.8%) | 4 | 1831 | 488 (26.6%) |
| Keokuk County | 46 | 7131 | 1626 (22.8%) | 4 | 1459 | 425 (29.1%) |
| Total | 95 | 13320 | 3347 (25.1%) | 8 | 3290 | 913 (27.8%) |
Number of S. aureus samples from stores and households who shop at those stores. Stores 4 & 5 were not included in similarity analysis.
| Store | Household | Meat | ||
|---|---|---|---|---|
|
| Total samples |
| Total samples | |
| 1 | 502 | 1770 | 128 | 508 |
| 2 | 101 | 608 | 68 | 407 |
| 3 | 77 | 381 | 177 | 504 |
| 4 | 0 | 0 | 5 | 28 |
| 5 | 0 | 0 | 173 | 497 |
| 6 | 464 | 1376 | 147 | 534 |
| 7 | 288 | 1442 | 100 | 400 |
| 8 | 287 | 715 | 115 | 412 |
| Total | 1719 | 6292 | 913 | 3290 |
Morisita indices for S. aureus spa type diversity in meat samples in grocery stores and households who report shopping at those stores.
| Sampling | Store | Human | Meat | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| J-01 | J-02 | J-03 | K-06 | K-07 | K-08 | J-01 | J-02 | J-03 | K-06 | K-07 | K-08 | ||
| Human | J-01 | 1.00 | |||||||||||
| J-02 | 0.39 | 1.00 | |||||||||||
| J-03 | 0.46 | 0.02 | 1.00 | ||||||||||
| K-06 | 0.07 | 0.03 | 0.02 | 1.00 | |||||||||
| K-07 | 0.03 | 0.03 | 0.01 | 0.17 | 1.00 | ||||||||
| K-08 | 0.23 | 0.19 | 0.07 | 0.20 | 0.21 | 1.00 | |||||||
| Meat | J-01 | 0.06 | 0.04 | 0.00 | 0.38 | 0.29 | 0.24 | 1.00 | |||||
| J-02 | 0.25 | 0.14 | 0.07 | 0.45 | 0.07 | 0.33 | 0.72 | 1.00 | |||||
| J-03 | 0.04 | 0.04 | 0.00 | 0.14 | 0.04 | 0.17 | 0.30 | 0.36 | 1.00 | ||||
| K-06 | 0.14 | 0.19 | 0.00 | 0.36 | 0.15 | 0.27 | 0.82 | 0.80 | 0.35 | 1.00 | |||
| K-07 | 0.09 | 0.02 | 0.02 | 0.24 | 0.07 | 0.17 | 0.38 | 0.39 | 0.19 | 0.38 | 1.00 | ||
| K-08 | 0.10 | 0.03 | 0.00 | 0.23 | 0.13 | 0.14 | 0.55 | 0.48 | 0.43 | 0.59 | 0.30 | 1.00 | |
A Morisita index of 1.0 indicates complete similarity in composition, a score of 0.0 indicates complete dissimilarity. J stands for Johnson County, K indicates Keokuk County.
Figure 1(a) Shepard plot visualizing ordination fit for human versus meat samples. (b) NMDS for visualizing patterns of spa type assemblages from human and meat samples. The distances between each pair of observations were plotted against their original dissimilarities. The R-squared and P-value of PERMANOVA are shown at the bottom right corner of the NMDS plot.
Figure 2Morisita indices showing the similarity of human spa type assemblages to those in the meat from the stores in which they shop in the same month (t) or month prior (t − 1) or following (t + 1). Values closer to 0 indicate less similarity in composition.
Figure 3(a) Shepard plot visualizing ordination fit for human samples in Census tracts. (b) NMDS plot for visualizing patterns of spa type assemblages among human samples grouped by census tract. Points indicate households, shaded polygons indicate census tracts. The R-squared and P-value of PERMANOVA are shown at the bottom right corner.
Figure 4(a) Shepard plot of ordination fit for human samples in Johnson versus Keokuk Counties. (b) NMDS plot visualizing patterns of spa type assemblages from human samples by county. The R-squared and P-value of PERMANOVA are shown at the bottom right corner.