| Literature DB >> 28882114 |
Chih-Chin Kao1,2, Shih-Ying Cheng3,4, Mei-Yi Wu5,6, Shu-Chen Chien3,4,7, Hsing-Fang Lu4,8, Yu-Wen Hsu4,9, Yan-Feng Zhang10, Mai-Szu Wu11,12,13, Wei-Chiao Chang14,15.
Abstract
BACKGROUND: Cardiovascular (CV) complications are the main cause of death in end-stage renal disease (ESRD) patients. The high CV risks are attributable to the additive effects of multiple factors. Endothelin (EDN) is a potent vasoconstrictor and plays a role in regulating vascular homeostasis. However, whether variants of the EDN gene are associated with risks of CV events is not known. We conducted a study to investigate associations of variants of the EDN gene with CV events in ESRD patients.Entities:
Keywords: Cardiovascular; Endothelin; Renal failure
Mesh:
Substances:
Year: 2017 PMID: 28882114 PMCID: PMC5590196 DOI: 10.1186/s12882-017-0707-2
Source DB: PubMed Journal: BMC Nephrol ISSN: 1471-2369 Impact factor: 2.388
Fig. 1a. Graphic view of the genotyped human EDN-1 gene. b. Graphic view of the genotyped human EDN-2 gene. c. Graphic view of the genotyped human EDN-3 gene
Minor allele frequencies of selected tagged single-nucleotide polymorphisms (SNPs) of the endothelin (EDN) gene family
| Gene | Position | SNP | Location | Ref | Alt | AFR fre | AMR fre | ASN fre | EUR fre | TWB fre | Our fre |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Ch6:12,289,406 | rs3087459 | 5’UTR | A | C | 0.19 | 0.14 | 0.20 | 0.20 | 0.23 | 0.17 |
| Ch6:12,291,749 | rs2248580 | Intron | C | A | 0.08 | 0.56 | 0.56 | 0.47 | 0.41 | 0.35 | |
| Ch6:12,292,539 | rs2070699 | Intron | G | T | 0.05 | 0.46 | 0.56 | 0.47 | 0.49 | 0.43 | |
| Ch6:12,296,022 | rs5370 | Missense | G | T | 0.14 | 0.17 | 0.28 | 0.21 | 0.31 | 0.23 | |
| Ch6:12,297,620 | rs4714384 | 3’UTR | T | C | 0.71 | 0.38 | 0.62 | 0.37 | 0.38 | 0.34 | |
|
| Ch1:41,485,234 | rs11572340 | 5’UTR | C | A | 0.04 | 0.16 | 0.07 | 0.21 | 0.06 | 0.02 |
| Ch1:41,484,301 | rs11210278 | Intron | C | T | 0.01 | 0.11 | 0.33 | 0.19 | 0.30 | 0.29 | |
| Ch1:41,483,957 | rs2759257 | Intron | A | C | 0.75 | 0.89 | 0.91 | 0.86 | 0.88 | 0.93 | |
| Ch1:41,478,124 | rs11572377 | 3’UTR | C | G | 0.01 | 0.01 | 0.08 | 0.02 | 0.09 | 0.05 | |
|
| Ch20:59,303,616 | rs742650 | Intron | C | T | 0.00 | 0.03 | 0.15 | 0.06 | 0.14 | 0.11 |
| Ch20:59,301,100 | rs260741 | Intron | G | A | 0.06 | 0.31 | 0.24 | 0.21 | 0.25 | 0.27 | |
| Ch20:59,305,927 | rs260740 | Intron | T | G | 0.28 | 0.25 | 0.22 | 0.28 | 0.22 | 0.15 | |
| Ch20:59,303,025 | rs197174 | Intron | T | C | 0.63 | 0.30 | 0.16 | 0.26 | 0.16 | 0.12 | |
| Ch20:59,303,536 | rs197173 | Intron | T | G | 0.96 | 0.67 | 0.72 | 0.85 | 0.74 | 0.74 | |
| Ch20:59,309,196 | rs6064764 | Intron | T | C | 0.03 | 0.20 | 0.07 | 0.32 | 0.09 | 0.10 | |
| Ch20:59,309,707 | rs926632 | Intron | C | T | 0.42 | 0.70 | 0.85 | 0.70 | 0.87 | 0.89 | |
| Ch20:59,319,323 | rs882345 | Intron | A | G | 0.10 | 0.16 | 0.15 | 0.19 | 0.13 | 0.09 | |
| Ch20:59,324,630 | rs3026575 | 3’UTR | G | A | 0.00 | 0.00 | 0.05 | 0.00 | 0.04 | 0.14 | |
| Ch20:59,324,605 | rs11570352 | 3’UTR | C | T | 0.00 | 0.00 | 0.05 | 0.00 | 0.06 | 0.06 |
Fre Alt frequency, UTR untranslated region
Baseline characteristics of study patients according to cardiovascular disease (CVD)
| CVD ( | No CVD ( |
| |
|---|---|---|---|
| Gender, male, | 74 (62.7%) | 29 (40.3%) |
|
| Age (years) | 67 ± 13 | 60 ± 12 |
|
| Dialysis vintage (years) | 4.3 ± 3.8 | 5.5 ± 6.7 | 0.111 |
| Current smoking (%) | 20 (16.9%) | 5 (6.9%) | 0.050 |
| Diabetes, | 73 (61.9%) | 17 (23.6%) |
|
| ERI (unit/week/kg/Hb) | 8.5 ± 6.7 | 8.0 ± 4.1 | 0.600 |
| Hemoglobin (g/dl) | 10.7 ± 1.2 | 10.7 ± 1.1 | 0.980 |
| Albumin (g/dl) | 3.9 ± 0.4 | 4.1 ± 0.4 |
|
| Ferritin (mg/dl) | 418 ± 401 | 458 ± 736 | 0.635 |
| Iron (mg/dl) | 65 ± 24 | 68 ± 33 | 0.571 |
| TIBC (mg/dl) | 236 ± 47 | 242 ± 54 | 0.441 |
| Serum i-PTH (pg/mL) | 277 ± 363 | 422 ± 354 |
|
| Kt/V | 1.44 ± 0.26 | 1.60 ± 0.31 |
|
| Cause of ESRD, n (%) |
| ||
| Hypertension | 16 (13.5%) | 18 (25.0%) | |
| Diabetes | 67 (56.8%) | 17 (23.6%) | |
| GN | 14 (11.9%) | 22 (30.6%) | |
| CHF | 8 (6.8%) | 0 (0%) | |
| Others | 13 (11.0%) | 15 (20.8%) |
CHF congestive heart failure, ERI erythropoietin resistance index, ESRD end-stage renal disease, GN glomerulonephritis, iPTH parathyroid hormone, Kt/V dialysis adequacy, TIBC total iron-binding capacity. p values of <0.05 are shown in bold
Association analysis of genetic polymorphisms of the EDN1 gene and cardiovascular disease susceptibility in end-stage renal disease patients
| Cardiovascular disease susceptibility | Recessive | |||||
|---|---|---|---|---|---|---|
| rs number | Genotype | Cases (%) | Control (%) | OR (95% CI) |
| q-value |
| rs3087459 | CC | 3 (3%) | 3 (5.8%) | 0.06 (0.01–0.69) |
| 0.086 |
| CA | 26 (25.7%) | 13 (25%) | 1 | |||
| AA | 72 (71.3%) | 36 (69.2%) | 1 | |||
| rs2248580 | CC | 8 (7.8%) | 12 (21.8%) | 0.10 (0.02–0.47) |
|
|
| CA | 49 (48.0%) | 22 (40.0%) | 1 | |||
| AA | 45 (44.1%) | 21 (38.2%) | 1 | |||
| rs2070699 | GG | 11 (11.7%) | 16 (29.6%) | 0.09 (0.02–0.38) |
|
|
| GT | 50 (53.2%) | 22 (40.7%) | 1 | |||
| TT | 33 (35.1%) | 16 (29.6%) | 1 | |||
| rs5370 | TT | 5 (2.5%) | 4 (10.0%) | 0.30 (0.04–2.08) | 0.216 | 0.388 |
| TG | 32 (40.0%) | 20 (32.2%) | 1 | |||
| GG | 61 (57.5%) | 28 (57.8%) | 1 | |||
| rs4714384 | TT | 7 (7.2%) | 14 (26.9%) | 0.05 (0.01–0.23) |
|
|
| TC | 42 (43.3%) | 17 (32.7%) | 1 | |||
| CC | 48 (49.5%) | 21 (40.4%) | 1 | |||
p values were adjusted for age, sex, smoking, diabetes, hypertension, pre-existing cardiovascular events, hemoglobin, albumin, ferritin, and the erythropoietin resistance index. p and q-values of <0.05 are shown in bold. q-values of <0.05 were considered statistically significant after correction for multiple testing. OR, odds ratio; CI, confidence interval
Association analysis of genetic polymorphisms of the EDN2 gene and cardiovascular disease susceptibility in end-stage renal disease patients
| Cardiovascular disease susceptibility | Recessive | |||||
|---|---|---|---|---|---|---|
| rs number | Genotype | Cases (%) | Control (%) | OR (95% CI) |
| q-value |
| rs11572340 | AA | 1 (0.9%) | 0 (0%) | 0.74 (0.14 ~ 3.85) | 0.708 | 0.796 |
| AC | 5 (4.3%) | 2 (2.9%) | 1 | |||
| CC | 109 (94.8%) | 66 (97.1%) | 1 | |||
| rs11210278 | TT | 8 (9.9%) | 7 (18.9%) | 0.17 (0.03 ~ 0.88) |
| 0.126 |
| TC | 30 (37.0%) | 9 (24.3%) | 1 | |||
| CC | 43 (53.1%) | 21 (56.8%) | 1 | |||
| rs2759257 | AA | 0 (0%) | 0 (0%) | - | NA | NA |
| AC | 17 (15.3%) | 6 (9.4%) | 1 | |||
| CC | 94 (84.7%) | 58 (90.6%) | 1 | |||
| rs11572377 | GG | 2 (1.7%) | 1 (1.4%) | 0.88 (0.07 ~ 11.11) | 0.920 | 0.953 |
| GC | 10 (8.6%) | 2 (2.8%) | 1 | |||
| CC | 104 (89.7%) | 69 (95.8%) | 1 | |||
p values were adjusted for age, sex, smoking, diabetes, hypertension, pre-existing cardiovascular events, hemoglobin, albumin, ferritin, and the erythropoietin resistance index. p and q-values of <0.05 are shown in bold. q-values of <0.05 were considered statistically significant after correction for multiple testing. OR, odds ratio; CI, confidence interval
Association analysis of genetic polymorphisms of the EDN3 gene and cardiovascular disease susceptibility in end-stage renal disease patients
| Cardiovascular disease susceptibility | Recessive | |||||
|---|---|---|---|---|---|---|
| rs number | Genotype | Cases (%) | Control (%) | OR (95% CI) |
| q-value |
| rs742650 | TT | 0 (0%) | 2 (3.9%) | - | 0.087 | 0.197 |
| CT | 20 (21.5%) | 7 (13.7%) | 1 | |||
| CC | 73 (78.5%) | 42 (82.4%) | 1 | |||
| rs260741 | AA | 8 (8.4%) | 4 (9.1%) | 0.45 (0.08 ~ 2.44) | 0.356 | 0.583 |
| AG | 31 (32.6%) | 19 (43.2%) | 1 | |||
| GG | 56 (58.9%) | 21 (47.7%) | 1 | |||
| rs260740 | GG | 1 (1.0%) | 0 (0%) | - | 0.708 | 0.796 |
| GT | 27 (26.0%) | 16 (32.0%) | 1 | |||
| TT | 76 (73.1%) | 34 (68.0%) | 1 | |||
| rs197174 | GG | 1 (1.0%) | 4 (7.7%) | 0.12 (0.01 ~ 1.49) | 0.074 | 0.197 |
| GA | 19 (18.4%) | 9 (17.3%) | 1 | |||
| AA | 83 (39.0%) | 39 (75.0%) | 1 | |||
| rs197173 | TT | 9 (9.0%) | 6 (11.1%) | 1.67 (0.38 ~ 7.14) | 0.497 | 0.662 |
| GT | 33 (33.0%) | 18 (33.3%) | 1 | |||
| GG | 58 (58.0%) | 30 (55.6%) | 1 | |||
| rs6064764 | CC | 2 (1.9%) | 1 (1.6%) | 0.03 (0.01 ~ 1.59) | 0.083 | 0.197 |
| CT | 24 (22.4%) | 4 (6.3%) | 1 | |||
| TT | 81 (75.7%) | 58 (92.1%) | 1 | |||
| rs926632 | CC | 2 (1.9%) | 3 (5.2%) | 2.86 (0.97 ~ 8.33) | 0.514 | 0.662 |
| CT | 19 (17.8%) | 8 (13.8%) | 1 | |||
| TT | 86 (80.4%) | 47 (81.0%) | 1 | |||
| rs882345 | GG | 2 (1.9%) | 2 (3.7%) | 0.92 (0.05 ~ 16.67) | 0.953 | 0.953 |
| GA | 14 (13.5%) | 7 (13.0%) | 1 | |||
| AA | 88 (84.6%) | 45 (83.3%) | 1 | |||
| rs3026575 | AA | 1 (1.0%) | 0 (0%) | - | 0.515 | 0.662 |
| AG | 7 (6.8%) | 4 (7.1%) | 1 | |||
| GG | 95 (92.2%) | 52 (92.9%) | 1 | |||
| rs11570352 | TT | 3 (2.5%) | 5 (7.0%) | 0.20 (0.01 ~ 2.94) | 0.216 | 0.388 |
| TC | 4 (3.4%) | 1 (1.4%) | 1 | |||
| CC | 111 (94.1%) | 65 (91.5%) | 1 | |||
p values were adjusted for age, sex, smoking, diabetes, hypertension, pre-existing cardiovascular events, hemoglobin, albumin, ferritin, and the erythropoietin resistance index. q-values of <0.05 were considered statistically significant after correction for multiple testing. OR, odds ratio; CI, confidence interval
Endothelin (EDN) gene family-related expression quantitative trait loci (eQTLs)
| Gene symbol | SNP Id | GENCODE ID |
| Effect size | Tissue |
|---|---|---|---|---|---|
|
| rs3087459 | ENSG00000078401.6 | 1.5e-5 | 0.25 | Cells - Transformed fibroblasts |
|
| rs4714384 | ENSG00000223321.1 | 6.3e-9 | −0.37 | Artery - Tibial |
|
| rs11210278 | ENSG00000127129.5 | 3.1e-6 | 0.55 | Heart - Left Ventricle |