| Literature DB >> 28879164 |
Philip C Onyebujoh1, Ajay K Thirumala2, Amy Piatek3.
Abstract
Entities:
Year: 2017 PMID: 28879164 PMCID: PMC5523915 DOI: 10.4102/ajlm.v6i2.519
Source DB: PubMed Journal: Afr J Lab Med ISSN: 2225-2002
FIGURE 1Tuberculosis incidence and notification rates. Estimated tuberculosis incidence rates per 100 000 population and tuberculosis notifications reported to WHO (1) are presented, along with new HIV infections reported to the UNAIDS database (2) between 1990 and 2013 in 18 sub-Saharan African countries (Southern and Eastern Africa, excluding South Africa).
Key strengths, weaknesses, opportunities and threats for tuberculosis laboratory services in Africa.†
| Strengths | Weaknesses |
|---|---|
| Over 15 000 tuberculosis microscopy laboratories in public settings; 78 tuberculosis culture and DST laboratories; 61 LPA laboratories (at the end of 2015) | High tuberculosis / HIV rates and mortality; Increasing MDR tuberculosis rates and mortality |
| Rapid expansion of molecular technologies; GeneXpert: 871 GX systems; 18 735 GX modules | Weak laboratory organizational structures; Quality laboratory systems; Networks and accreditations |
| Three SRLs (South Africa, Uganda, Benin); Plans for expansion | ‘Missed-to-diagnose’ cases for tuberculosis, MDR tuberculosis, and tuberculosis/HIV |
| ASLM strategies and vision driven by strong partnership with USG | Inequitable ‘reach’ of laboratory services / systems |
| GLI Africa-driven laboratory agenda in the past three year | Sub-optimal up-take of rapid diagnostics; Inadequate funding; Infrastructure |
| Global Fund-supported regional laboratory networking initiatives | Inadequate diagnosis strategies for the key and vulnerable populations |
| Young technical personnel; Availability and low human resources hiring costs | Inadequate data on population dynamics of some key and vulnerable groups |
| Strong and well supported NTPs for tuberculosis care (Southern Africa) | Low funding and poor ownership of laboratories by MoH and changing partners |
| Emerging local and regional leadership for tuberculosis/HIV, MDR-tuberculosis | Low commitment from health personnel; Inadequate career path and retention plans |
| High partner support (technically strong); Long standing relationships | Short-term strategy / plans of partner funds (typically 2 years or less) |
| Regional strategies; Country NSPs; WHO-AFRO missions for NTPs | Unclear service pathway for tuberculosis laboratories in MoH organogram |
| Existing community systems with NGOs / CSOs | No clear plans / funding for maintenance of laboratory equipment on purchase |
| Strong scientific evidence for programmatic tuberculosis interventions | Absence of integrated laboratory-specific strategic plans; No adequate capacity for universal tuberculosis DST provision |
| Increasing focus on tuberculosis surveillance / reporting systems | Lack of standardised reagents and equipment sources available for laboratories to utilise |
| Increased accreditation and training support through ASLM | Lack of comprehensive electronic surveillance systems for laboratories |
| Increased awareness of gaps in tuberculosis laboratory services in NTP | |
| Streamlining laboratory organisation structures | Lack of adequate financial resources in lower income countries |
| Networking laboratories at regional levels | Socioeconomic determinants as risk factors for tuberculosis (poverty, stigma, etc.) |
| Networking laboratory professional bodies across the region | Overdependence on development partners / donor support |
| Trainings for developing a highly skilled, motivated laboratory workforce | Poorly coordinated partner technical support, sometimes overlapping purposes |
| Integrating parallel systems; Avoiding wastage of resources | Inadequate strategic planning for utilisation of existing resources |
| High impact strategies for tuberculosis (miners, transient-urban and cross-border migrants, KAP) | Donor exhaustion and quick changes in partner priorities |
| Innovative strategies for community role to enhance equitable access | Occasional political and social weaknesses and disturbances |
| Integrated systems with focus on point-of-care diagnostics / rapid diagnostics | |
| Enhanced disease monitoring surveys / surveillances in general | |
| Collaboration between donors and technical / implementation partners | |
ASLM, African Society for Laboratory Medicine; CSO, civil society organisations; DST, drug susceptibility testing; GLI, Global Laboratory Initiative; GX, GeneXpert; KAP, knowledge, attitudes and practises; LPA, line probe assay; MDR, multi-drug resistant; MoH, Ministries of Heath; NGO, non-governmental organization; NTP, National Tuberculosis Program; NSP, National Strategic Plan; SRL, Supranational Reference Laboratory; USG, United States Government; WHO-AFRO, World Health Organization, Regional Office for Africa.
, Compilations are based on the WHO-AFRO-IST (Inter-country Support Team for East/Southern Africa) Tuberculosis programme review mission reports, country-laboratory assessments reports, and periodic meeting reports of GLI- Africa (2013–2016). Authors acted as external reviewers in several such missions.
New tuberculosis and relapse cases notified in Africa, 2010–2015.†
| Year | Total new and relapse tuberculosis case notifications | Case detection rate (all forms) | Proportion of new and relapse pulmonary tuberculosis cases bacteriologically confirmed |
|---|---|---|---|
| 2010 | 1 380 530 | 50% | 64% |
| 2011 | 1 393 544 | 50% | 57% |
| 2012 | 1 353 513 | 49% | 59% |
| 2013 | 1 337 693 | 49% | 57% |
| 2014 | 1 303 327 | 48% | 62% |
| 2015 | 1 296 122 | 48% | 64% |
Source: Data extracted from World Health Organization tuberculosis database: https://extranet.who.int/tme/generateCSV.asp?ds=notifications
, Data from 47 WHO African Region countries. Data from Equatorial Guinea for 2013, 2012 and Comoros for 2015 and 2010 are not included.
Tuberculosis laboratory services in Africa, 2009–2014.
| Year | Total no. of laboratories | No. of new, laboratory-confirmed tuberculosis cases | No. of HIV-positive tuberculosis cases | Total no. of laboratories | No. of laboratory-confirmed cases of RR- or MDR-TB | ||
|---|---|---|---|---|---|---|---|
| Smear microscopy | GeneXpert systems | Drug susceptibility testing (phenotypic) | Line probe assay | ||||
| 2009 | 10 501 | - | 639 238 | 370 245 | 65 | 19 | 11 239 |
| 2010 | 11 855 | - | 750 221 | 394 332 | 68 | 34 | 18 826 |
| 2011 | 12 800 | 121 | 683 104 | 466 075 | 67 | 36 | 14 786 |
| 2012 | 13 612 | 318 | 670 390 | 456 187 | 64 | 55 | 29 553 |
| 2013 | 13 861 | 618 | 591 882 | 444 385 | 76 | 56 | 31 387 |
| 2014 | 15 233 | 871 | 635 356 | 415 657 | 78 | 61 | 25 653 |
Source: Data extracted from World Health Organization tuberculosis database. Available from: https://extranet.who.int/tme/generateCSV.asp?ds=labs
MDR, multi-drug resistant; RR, rifampicin resistant.
, Includes 18 735 GX modules in total for 871 GX systems; MDR, multi-drug resistant; RR, rifampicin resistant.
Regional distribution of first- and second-line tuberculosis drug susceptibility tests performed for notified cases reported in 2015 in Africa.
| WHO AFRO sub-region | No. of countries | No. of new laboratory-confirmed TB cases | Tested for DST/GX No. (%) | RR/MDR TB detected No. (%) | No. of MDR-TB cases detected | No. of RR/MDR-TB cases on treatment No. (%) | No. of MDR-TB patients on treatment who received SL-DST No. (%) | XDR-TB detected |
|---|---|---|---|---|---|---|---|---|
| Central | 7 | 33 070 | 1979 (5.98%) | 280 (14.15%) | 227 | 128 (45.71%) | 81 (63.28%) | 0 |
| North | 2 | 10 771 | 749 (6.95%) | 71 (9.48%) | 53 | 50 (70.42%) | NA | NA |
| East | 7 | 124 845 | 26 323 (21.08%) | 1533 (5.82%) | 628 | 1404 (91.59%) | 151 (10.75%) | 0 |
| West | 17 | 125 020 | 33 203 (26.56%) | 1811 (5.45%) | 771 | 1118 (61.73%) | 103 (9.21%) | 2 (1.9%) |
| SADC | 14 | 341 939 | 287 181 (83.99%) | 21 959 (7.65%) | 9580 | 13 734 (62.54%) | 3563 (25.94%) | 551 (15.4%) |
AFRO, Regional Office for Africa; DST, Drug susceptibility testing; GX, GeneXpert; MDR, multi-drug resistant; RR, rifampicin resistant; SADC, Southern African Development Community; SL, second-line; TB, tuberculosis; WHO, World Health Organization; XDR, extensively drug-resistant.
FIGURE 2Tuberculosis drug susceptibility testing. First- and second-line tuberculosis drug susceptibility tests performed for notified cases reported in 2015 in Africa.
Quality of tuberculosis laboratory services in Africa, 2009–2014.
| Year | Microscopy laboratories | DST laboratories | GeneXpert laboratories with EQA | LPA laboratories with EQA | ||
|---|---|---|---|---|---|---|
| with EQA | with acceptable performance | with EQA | with acceptable performance | |||
| 2009 | 50% | 40% | 71% | 63% | 32% | |
| 2010 | 60% | 47% | 53% | 49% | 47% | |
| 2011 | 56% | 49% | 73% | 70% | 28% | |
| 2012 | 65% | 44% | 81% | 80% | 24% | 73% |
| 2013 | 70% | 49% | 68% | 67% | 53% | 63% |
| 2014 | 69% | 44% | 64% | 63% | 55% | 46% |
Source: Data extracted from World Health Organization tuberculosis database. Available from: https://extranet.who.int/tme/generateCSV.asp?ds=labs
DST, drug susceptibility testing; EQA, external quality assurance; LPA, line probe assay.