Literature DB >> 28870097

Glycosylation profiling to evaluate glycoprotein immunogens against HIV-1.

Anna-Janina Behrens1, Weston B Struwe1, Max Crispin1,2,3.   

Abstract

INTRODUCTION: Much of the efforts to develop a vaccine against the human immunodeficiency virus (HIV) have focused on the design of recombinant mimics of the viral attachment glycoprotein (Env). The leading immunogens exhibit native-like antigenic properties and are being investigated for their ability to induce broadly neutralizing antibodies (bNAbs). Understanding the relative abundance of glycans at particular glycosylation sites on these immunogens is important as most bNAbs have evolved to recognize or evade the dense coat of glycans that masks much of the protein surface. Understanding the glycan structures on candidate immunogens enables triaging between native-like conformations and immunogens lacking key structural features as steric constraints limit glycan processing. The sensitivity of the processing state of a particular glycan to its structural environment has led to the need for quantitative glycan profiling and site-specific analysis to probe the structural integrity of immunogens. Areas covered: We review analytical methodologies for HIV immunogen evaluation and discuss how these studies have led to a greater understanding of the structural constraints that control the glycosylation state of the HIV attachment and fusion spike. Expert commentary: Total composition and site-specific glycosylation profiling are emerging as standard methods in the evaluation of Env-based immunogen candidates.

Entities:  

Keywords:  Env; HIV; envelope; glycomics; glycoproteomics; glycosylation; mass spectrometry; vaccine design

Mesh:

Substances:

Year:  2017        PMID: 28870097      PMCID: PMC5846109          DOI: 10.1080/14789450.2017.1376658

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  87 in total

Review 1.  Automated glycopeptide analysis--review of current state and future directions.

Authors:  David C Dallas; William F Martin; Serenus Hua; J Bruce German
Journal:  Brief Bioinform       Date:  2012-07-27       Impact factor: 11.622

2.  Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS.

Authors:  Rebecca S Glaskin; Kshitij Khatri; Qi Wang; Joseph Zaia; Catherine E Costello
Journal:  Anal Chem       Date:  2017-03-30       Impact factor: 6.986

3.  Simple separation of isomeric sialylated N-glycopeptides by a zwitterionic type of hydrophilic interaction chromatography.

Authors:  Yasuhiro Takegawa; Kisaburo Deguchi; Hiroki Ito; Takuro Keira; Hiroaki Nakagawa; Shin-Ichiro Nishimura
Journal:  J Sep Sci       Date:  2006-11       Impact factor: 3.645

4.  Travelling-wave ion mobility and negative ion fragmentation of high-mannose N-glycans.

Authors:  David J Harvey; Charlotte A Scarff; Matthew Edgeworth; Weston B Struwe; Kevin Pagel; Konstantinos Thalassinos; Max Crispin; Jim Scrivens
Journal:  J Mass Spectrom       Date:  2016-03       Impact factor: 1.982

5.  Glycosylation site-specific analysis of clade C HIV-1 envelope proteins.

Authors:  Eden P Go; Qing Chang; Hua-Xin Liao; Laura L Sutherland; S Munir Alam; Barton F Haynes; Heather Desaire
Journal:  J Proteome Res       Date:  2009-09       Impact factor: 4.466

6.  Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.

Authors:  Marie Pancera; Syed Shahzad-Ul-Hussan; Nicole A Doria-Rose; Jason S McLellan; Robert T Bailer; Kaifan Dai; Sandra Loesgen; Mark K Louder; Ryan P Staupe; Yongping Yang; Baoshan Zhang; Robert Parks; Joshua Eudailey; Krissey E Lloyd; Julie Blinn; S Munir Alam; Barton F Haynes; Mohammed N Amin; Lai-Xi Wang; Dennis R Burton; Wayne C Koff; Gary J Nabel; John R Mascola; Carole A Bewley; Peter D Kwong
Journal:  Nat Struct Mol Biol       Date:  2013-05-26       Impact factor: 15.369

Review 7.  A Blueprint for HIV Vaccine Discovery.

Authors:  Dennis R Burton; Rafi Ahmed; Dan H Barouch; Salvatore T Butera; Shane Crotty; Adam Godzik; Daniel E Kaufmann; M Juliana McElrath; Michel C Nussenzweig; Bali Pulendran; Chris N Scanlan; William R Schief; Guido Silvestri; Hendrik Streeck; Bruce D Walker; Laura M Walker; Andrew B Ward; Ian A Wilson; Richard Wyatt
Journal:  Cell Host Microbe       Date:  2012-10-18       Impact factor: 21.023

8.  Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization.

Authors:  Alba Torrents de la Peña; Jean-Philippe Julien; Steven W de Taeye; Fernando Garces; Miklos Guttman; Gabriel Ozorowski; Laura K Pritchard; Anna-Janina Behrens; Eden P Go; Judith A Burger; Edith E Schermer; Kwinten Sliepen; Thomas J Ketas; Pavel Pugach; Anila Yasmeen; Christopher A Cottrell; Jonathan L Torres; Charlotte D Vavourakis; Marit J van Gils; Celia LaBranche; David C Montefiori; Heather Desaire; Max Crispin; Per Johan Klasse; Kelly K Lee; John P Moore; Andrew B Ward; Ian A Wilson; Rogier W Sanders
Journal:  Cell Rep       Date:  2017-08-22       Impact factor: 9.423

9.  Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope.

Authors:  Laura K Pritchard; David J Harvey; Camille Bonomelli; Max Crispin; Katie J Doores
Journal:  J Virol       Date:  2015-06-17       Impact factor: 5.103

10.  CD4-induced activation in a soluble HIV-1 Env trimer.

Authors:  Miklos Guttman; Natalie K Garcia; Albert Cupo; Tsutomu Matsui; Jean-Philippe Julien; Rogier W Sanders; Ian A Wilson; John P Moore; Kelly K Lee
Journal:  Structure       Date:  2014-06-12       Impact factor: 5.006

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  12 in total

Review 1.  Mass spectrometry for the identification and analysis of highly complex glycosylation of therapeutic or pathogenic proteins.

Authors:  Yukako Ohyama; Kazuki Nakajima; Matthew B Renfrow; Jan Novak; Kazuo Takahashi
Journal:  Expert Rev Proteomics       Date:  2020-05-28       Impact factor: 3.940

2.  Integrity of Glycosylation Processing of a Glycan-Depleted Trimeric HIV-1 Immunogen Targeting Key B-Cell Lineages.

Authors:  Anna-Janina Behrens; Abhinav Kumar; Max Medina-Ramirez; Albert Cupo; Kevin Marshall; Victor M Cruz Portillo; David J Harvey; Gabriel Ozorowski; Nicole Zitzmann; Ian A Wilson; Andrew B Ward; Weston B Struwe; John P Moore; Rogier W Sanders; Max Crispin
Journal:  J Proteome Res       Date:  2018-02-08       Impact factor: 4.466

Review 3.  Protein and Glycan Mimicry in HIV Vaccine Design.

Authors:  Gemma E Seabright; Katie J Doores; Dennis R Burton; Max Crispin
Journal:  J Mol Biol       Date:  2019-04-24       Impact factor: 5.469

Review 4.  An Evidence Based Perspective on mRNA-SARS-CoV-2 Vaccine Development.

Authors:  Fuzhou Wang; Richard M Kream; George B Stefano
Journal:  Med Sci Monit       Date:  2020-05-05

Review 5.  The expanding role of mass spectrometry in the field of vaccine development.

Authors:  Vaneet Kumar Sharma; Ity Sharma; James Glick
Journal:  Mass Spectrom Rev       Date:  2018-05-31       Impact factor: 10.946

6.  HIV-1 Envelope Glycan Composition as a Key Determinant of Efficient Virus Transmission via DC-SIGN and Resistance to Inhibitory Lectins.

Authors:  Muzafar Jan; Chitra Upadhyay; Catarina E Hioe
Journal:  iScience       Date:  2019-10-18

Review 7.  A Roadmap for the Molecular Farming of Viral Glycoprotein Vaccines: Engineering Glycosylation and Glycosylation-Directed Folding.

Authors:  Emmanuel Margolin; Max Crispin; Ann Meyers; Ros Chapman; Edward P Rybicki
Journal:  Front Plant Sci       Date:  2020-12-03       Impact factor: 5.753

8.  Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions.

Authors:  Gemma E Seabright; Christopher A Cottrell; Marit J van Gils; Alessio D'addabbo; David J Harvey; Anna-Janina Behrens; Joel D Allen; Yasunori Watanabe; Nicole Scaringi; Thomas M Polveroni; Allison Maker; Snezana Vasiljevic; Natalia de Val; Rogier W Sanders; Andrew B Ward; Max Crispin
Journal:  Structure       Date:  2020-05-19       Impact factor: 5.006

9.  Glycosylation and Serological Reactivity of an Expression-enhanced SARS-CoV-2 Viral Spike Mimetic.

Authors:  Himanshi Chawla; Sian E Jossi; Sian E Faustini; Firdaus Samsudin; Joel D Allen; Yasunori Watanabe; Maddy L Newby; Edith Marcial-Juárez; Rachel E Lamerton; Jason S McLellan; Peter J Bond; Alex G Richter; Adam F Cunningham; Max Crispin
Journal:  J Mol Biol       Date:  2021-10-27       Impact factor: 5.469

10.  Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer.

Authors:  Liwei Cao; Matthias Pauthner; Raiees Andrabi; Kimmo Rantalainen; Zachary Berndsen; Jolene K Diedrich; Sergey Menis; Devin Sok; Raiza Bastidas; Sung-Kyu Robin Park; Claire M Delahunty; Lin He; Javier Guenaga; Richard T Wyatt; William R Schief; Andrew B Ward; John R Yates; Dennis R Burton; James C Paulson
Journal:  Nat Commun       Date:  2018-09-12       Impact factor: 14.919

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