Literature DB >> 28865184

DNA barcoding of invasive plants in China: A resource for identifying invasive plants.

Song-Zhi Xu1, Zhen-Yu Li1, Xiao-Hua Jin1.   

Abstract

Invasive plants have aroused attention globally for causing ecological damage and having a negative impact on the economy and human health. However, it can be extremely challenging to rapidly and accurately identify invasive plants based on morphology because they are an assemblage of many different families and many plant materials lack sufficient diagnostic characteristics during border inspections. It is therefore urgent to evaluate candidate loci and build a reliable genetic library to prevent invasive plants from entering China. In this study, five common single markers (ITS, ITS2, matK, rbcL and trnH-psbA) were evaluated using 634 species (including 469 invasive plant species in China, 10 new records to China, 16 potentially invasive plant species around the world but not introduced into China yet and 139 plant species native to China) based on three different methods. Our results indicated that ITS2 displayed largest intra- and interspecific divergence (1.72% and 91.46%). Based on NJ tree method, ITS2, ITS, matK, rbcL and trnH-psbA provided 76.84%, 76.5%, 63.21%, 52.86% and 50.68% discrimination rates, respectively. The combination of ITS + matK performed best and provided 91.03% discriminatory power, followed by ITS2 + matK (85.78%). For identifying unknown individuals, ITS + matK had 100% correct identification rate based on our database, followed by ITS/ITS2 (both 93.33%) and ITS2 + matK (91.67%). Thus, we propose ITS/ITS2 + matK as the most suitable barcode for invasive plants in China. This study also demonstrated that DNA barcoding is an efficient tool for identifying invasive species.
© 2017 John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA barcoding; ITS/ITS2 + matK; invasive plant species; molecular marker

Mesh:

Substances:

Year:  2017        PMID: 28865184     DOI: 10.1111/1755-0998.12715

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  9 in total

Review 1.  The Promise of Molecular and Genomic Techniques for Biodiversity Research and DNA Barcoding of the Arabian Peninsula Flora.

Authors:  Kareem A Mosa; Sanjay Gairola; Rahul Jamdade; Ali El-Keblawy; Khawla Ibrahim Al Shaer; Eman Khalid Al Harthi; Hatem A Shabana; Tamer Mahmoud
Journal:  Front Plant Sci       Date:  2019-01-21       Impact factor: 5.753

2.  DNA Barcoding Subtropical Aphids and Implications for Population Differentiation.

Authors:  Qiang Li; Jun Deng; Cui Chen; Linda Zeng; Xiaolan Lin; Zhentao Cheng; Gexia Qiao; Xiaolei Huang
Journal:  Insects       Date:  2019-12-20       Impact factor: 2.769

3.  Taxonomical Evaluation of Plant Chloroplastic Markers by Bayesian Classifier.

Authors:  Luisa Matiz-Ceron; Alejandro Reyes; Juan Anzola
Journal:  Front Plant Sci       Date:  2022-02-03       Impact factor: 5.753

4.  DNA barcoding of medicinal orchids in Asia.

Authors:  Bhakta Bahadur Raskoti; Rita Ale
Journal:  Sci Rep       Date:  2021-12-08       Impact factor: 4.379

5.  Establishing community-wide DNA barcode references for conserving mangrove forests in China.

Authors:  Xiaomeng Mao; Wei Xie; Xinnian Li; Suhua Shi; Zixiao Guo
Journal:  BMC Plant Biol       Date:  2021-12-04       Impact factor: 4.215

Review 6.  Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review.

Authors:  Pritam Banerjee; Kathryn A Stewart; Gobinda Dey; Caterina M Antognazza; Raju Kumar Sharma; Jyoti Prakash Maity; Santanu Saha; Hideyuki Doi; Natasha de Vere; Michael W Y Chan; Pin-Yun Lin; Hung-Chun Chao; Chien-Yen Chen
Journal:  AoB Plants       Date:  2022-07-02       Impact factor: 3.138

7.  The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens.

Authors:  Duc-Thanh Le; Yu-Qu Zhang; Yong Xu; Li-Xiu Guo; Zhi-Ping Ruan; Kevin S Burgess; Xue-Jun Ge
Journal:  PLoS One       Date:  2020-07-31       Impact factor: 3.240

8.  Constructing a DNA barcode reference library for southern herbs in China: A resource for authentication of southern Chinese medicine.

Authors:  Lu Gong; Xiao Hui Qiu; Juan Huang; Wen Xu; Jun Qi Bai; Jing Zhang; He Su; Chu Mei Xu; Zhi Hai Huang
Journal:  PLoS One       Date:  2018-07-25       Impact factor: 3.240

9.  The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material.

Authors:  Inger Greve Alsos; Sebastien Lavergne; Marie Kristine Føreid Merkel; Marti Boleda; Youri Lammers; Adriana Alberti; Charles Pouchon; France Denoeud; Iva Pitelkova; Mihai Pușcaș; Cristina Roquet; Bogdan-Iuliu Hurdu; Wilfried Thuiller; Niklaus E Zimmermann; Peter M Hollingsworth; Eric Coissac
Journal:  Plants (Basel)       Date:  2020-04-01
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.