Literature DB >> 28865080

Density functional study of porphyrin distortion effects on redox potential of heme.

Yasuhiro Imada1, Haruki Nakamura1, Yu Takano1,2.   

Abstract

Heme is involved in various biochemical roles in hemoproteins. In the present study, the effect of heme distortion on the redox potential was systematically investigated with density functional calculations. We focused on the ruffled and saddled distortions of heme, which correspond to the two lowest-frequency normal modes. Our computations demonstrated that the ruffled distortion tended to reduce the redox potential of heme and that the transition of the electronic configuration occurred from (dxz , dyz )3 (dxy )2 to (dxz , dyz )4 (dxy )1 . In contrast, the saddled distortion had a tendency toward an increase in the redox potential, and no transition of the electronic configuration occurred. In experiments, these tendencies were found in the relationship between with the heme distortions and the redox potentials in cytochrome c3 .
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  heme; redox potential; ruffled distortion; saddled distortion

Mesh:

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Year:  2017        PMID: 28865080     DOI: 10.1002/jcc.25058

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

1.  Analysis of Fluctuation in the Heme-Binding Pocket and Heme Distortion in Hemoglobin and Myoglobin.

Authors:  Hiroko X Kondo; Yu Takano
Journal:  Life (Basel)       Date:  2022-01-29

2.  Elucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural Network.

Authors:  Hiroko X Kondo; Hiroyuki Iizuka; Gen Masumoto; Yuichi Kabaya; Yusuke Kanematsu; Yu Takano
Journal:  Biomolecules       Date:  2022-08-24

3.  Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.

Authors:  Dennis Huwald; Sabrina Duda; Raphael Gasper; Vincent Olieric; Eckhard Hofmann; Anja Hemschemeier
Journal:  J Biol Inorg Chem       Date:  2020-02-11       Impact factor: 3.358

  3 in total

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