Literature DB >> 28859436

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.

Dana S Clutter1, Shuntai Zhou2, Vici Varghese1, Soo-Yon Rhee1, Benjamin A Pinsky1,3, W Jeffrey Fessel4, Daniel B Klein5, Ean Spielvogel2, Susan P Holmes6, Leo B Hurley7, Michael J Silverberg7, Ronald Swanstrom2, Robert W Shafer1.   

Abstract

Minority variant human immunodeficiency virus type 1 (HIV-1) nonnucleoside reverse transcriptase inhibitor (NNRTI) resistance mutations are associated with an increased risk of virological failure during treatment with NNRTI-containing regimens. To determine whether individuals to whom variants with isolated NNRTI-associated drug resistance were transmitted are at increased risk of virological failure during treatment with a non-NNRTI-containing regimen, we identified minority variant resistance mutations in 33 individuals with isolated NNRTI-associated transmitted drug resistance and 49 matched controls. We found similar proportions of overall and nucleoside reverse transcriptase inhibitor-associated minority variant resistance mutations in both groups, suggesting that isolated NNRTI-associated transmitted drug resistance may not be a risk factor for virological failure during treatment with a non-NNRTI-containing regimen.
© The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  HIV-1; antiretroviral therapy; drug resistance; minority variant; next-generation sequencing

Mesh:

Substances:

Year:  2017        PMID: 28859436      PMCID: PMC5853472          DOI: 10.1093/infdis/jix338

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  15 in total

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Authors:  Michele W Tang; Tommy F Liu; Robert W Shafer
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2.  Trends in use of genotypic resistance testing and frequency of major drug resistance among antiretroviral-naive persons in the HIV Outpatient Study, 1999-2011.

Authors:  Kate Buchacz; Benjamin Young; Frank J Palella; Carl Armon; John T Brooks
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Review 3.  Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis.

Authors:  Jonathan Z Li; Roger Paredes; Heather J Ribaudo; Evguenia S Svarovskaia; Karin J Metzner; Michael J Kozal; Kathy Huppler Hullsiek; Melanie Balduin; Martin R Jakobsen; Anna Maria Geretti; Rodolphe Thiebaut; Lars Ostergaard; Bernard Masquelier; Jeffrey A Johnson; Michael D Miller; Daniel R Kuritzkes
Journal:  JAMA       Date:  2011-04-06       Impact factor: 56.272

4.  Detection of human immunodeficiency virus (HIV) type 1 M184V and K103N minority variants in patients with primary HIV infection.

Authors:  Thomas A Toni; Eugene L Asahchop; Daniela Moisi; Michel Ntemgwa; Maureen Oliveira; Bernard Masquelier; Bluma G Brenner; Mark A Wainberg
Journal:  Antimicrob Agents Chemother       Date:  2009-01-26       Impact factor: 5.191

5.  Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update.

Authors:  Diane E Bennett; Ricardo J Camacho; Dan Otelea; Daniel R Kuritzkes; Hervé Fleury; Mark Kiuchi; Walid Heneine; Rami Kantor; Michael R Jordan; Jonathan M Schapiro; Anne-Mieke Vandamme; Paul Sandstrom; Charles A B Boucher; David van de Vijver; Soo-Yon Rhee; Tommy F Liu; Deenan Pillay; Robert W Shafer
Journal:  PLoS One       Date:  2009-03-06       Impact factor: 3.240

6.  Amino acid substitutions at position 190 of human immunodeficiency virus type 1 reverse transcriptase increase susceptibility to delavirdine and impair virus replication.

Authors:  Wei Huang; Andrea Gamarnik; Kay Limoli; Christos J Petropoulos; Jeannette M Whitcomb
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

7.  Deep Sequencing of HIV-1 RNA and DNA in Newly Diagnosed Patients with Baseline Drug Resistance Showed No Indications for Hidden Resistance and Is Biased by Strong Interference of Hypermutation.

Authors:  Kenny Dauwe; Delfien Staelens; Leen Vancoillie; Virginie Mortier; Chris Verhofstede
Journal:  J Clin Microbiol       Date:  2016-04-13       Impact factor: 5.948

8.  Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.

Authors:  Soo-Yon Rhee; Jose Luis Blanco; Michael R Jordan; Jonathan Taylor; Philippe Lemey; Vici Varghese; Raph L Hamers; Silvia Bertagnolio; Tobias F Rinke de Wit; Avelin F Aghokeng; Jan Albert; Radko Avi; Santiago Avila-Rios; Pascal O Bessong; James I Brooks; Charles A B Boucher; Zabrina L Brumme; Michael P Busch; Hermann Bussmann; Marie-Laure Chaix; Bum Sik Chin; Toni T D'Aquin; Cillian F De Gascun; Anne Derache; Diane Descamps; Alaka K Deshpande; Cyrille F Djoko; Susan H Eshleman; Herve Fleury; Pierre Frange; Seiichiro Fujisaki; P Richard Harrigan; Junko Hattori; Africa Holguin; Gillian M Hunt; Hiroshi Ichimura; Pontiano Kaleebu; David Katzenstein; Sasisopin Kiertiburanakul; Jerome H Kim; Sung Soon Kim; Yanpeng Li; Irja Lutsar; Lynn Morris; Nicaise Ndembi; Kee Peng Ng; Ramesh S Paranjape; Martine Peeters; Mario Poljak; Matt A Price; Manon L Ragonnet-Cronin; Gustavo Reyes-Terán; Morgane Rolland; Sunee Sirivichayakul; Davey M Smith; Marcelo A Soares; Vincent V Soriano; Deogratius Ssemwanga; Maja Stanojevic; Mariane A Stefani; Wataru Sugiura; Somnuek Sungkanuparph; Amilcar Tanuri; Kok Keng Tee; Hong-Ha M Truong; David A M C van de Vijver; Nicole Vidal; Chunfu Yang; Rongge Yang; Gonzalo Yebra; John P A Ioannidis; Anne-Mieke Vandamme; Robert W Shafer
Journal:  PLoS Med       Date:  2015-04-07       Impact factor: 11.069

9.  Response to Therapy in Antiretroviral Therapy-Naive Patients With Isolated Nonnucleoside Reverse Transcriptase Inhibitor-Associated Transmitted Drug Resistance.

Authors:  Dana S Clutter; W Jeffrey Fessel; Soo-Yon Rhee; Leo B Hurley; Daniel B Klein; John P A Ioannidis; Michael J Silverberg; Robert W Shafer
Journal:  J Acquir Immune Defic Syndr       Date:  2016-06-01       Impact factor: 3.731

10.  HIV-1 Protease, Reverse Transcriptase, and Integrase Variation.

Authors:  Soo-Yon Rhee; Kris Sankaran; Vici Varghese; Mark A Winters; Christopher B Hurt; Joseph J Eron; Neil Parkin; Susan P Holmes; Mark Holodniy; Robert W Shafer
Journal:  J Virol       Date:  2016-06-10       Impact factor: 5.103

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  14 in total

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Journal:  JCI Insight       Date:  2019-10-03

2.  Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing.

Authors:  Philip L Tzou; Pramila Ariyaratne; Vici Varghese; Charlie Lee; Elian Rakhmanaliev; Carolin Villy; Meiqi Yee; Kevin Tan; Gerd Michel; Benjamin A Pinsky; Robert W Shafer
Journal:  J Clin Microbiol       Date:  2018-05-25       Impact factor: 5.948

3.  Low-Abundance Drug-Resistant HIV-1 Variants in Antiretroviral Drug-Naive Individuals: A Systematic Review of Detection Methods, Prevalence, and Clinical Impact.

Authors:  Herbert A Mbunkah; Silvia Bertagnolio; Raph L Hamers; Gillian Hunt; Seth Inzaule; Tobias F Rinke De Wit; Roger Paredes; Neil T Parkin; Michael R Jordan; Karin J Metzner
Journal:  J Infect Dis       Date:  2020-04-27       Impact factor: 5.226

4.  Diagnostic Accuracy of Pan-Degenerate Amplification and Adaptation Assay for HIV-1 Drug Resistance Mutation Analysis in Low- and Middle-Income Countries.

Authors:  Vinie Kouamou; Justen Manasa; David Katzenstein; Alan M McGregor; Chiratidzo E Ndhlovu; Tariro Makadzange
Journal:  J Clin Microbiol       Date:  2020-08-24       Impact factor: 11.677

5.  Prevalence and persistence of transmitted drug resistance mutations in the German HIV-1 Seroconverter Study Cohort.

Authors:  Patrycja Machnowska; Karolin Meixenberger; Daniel Schmidt; Heiko Jessen; Heribert Hillenbrand; Barbara Gunsenheimer-Bartmeyer; Osamah Hamouda; Claudia Kücherer; Norbert Bannert
Journal:  PLoS One       Date:  2019-01-16       Impact factor: 3.240

6.  Molecular Antiretroviral Resistance Markers of Human Immunodeficiency Virus-1 of CRF01_AE Subtype in Bali, Indonesia.

Authors:  Nyoman Sri Budayanti; Tuti Parwati Merati; Budiman Bela; Gusti Ngurah Mahardika
Journal:  Curr HIV Res       Date:  2018       Impact factor: 1.581

7.  Primer ID Next-Generation Sequencing for the Analysis of a Broad Spectrum Antiviral Induced Transition Mutations and Errors Rates in a Coronavirus Genome.

Authors:  Shuntai Zhou; Collin S Hill; Michael U Clark; Timothy P Sheahan; Ralph Baric; Ronald Swanstrom
Journal:  Bio Protoc       Date:  2021-03-05

Review 8.  Quality Control of Next-Generation Sequencing-Based HIV-1 Drug Resistance Data in Clinical Laboratory Information Systems Framework.

Authors:  Rupert Capina; Katherine Li; Levon Kearney; Anne-Mieke Vandamme; P Richard Harrigan; Kristel Van Laethem
Journal:  Viruses       Date:  2020-06-14       Impact factor: 5.048

9.  Limited Marginal Utility of Deep Sequencing for HIV Drug Resistance Testing in the Age of Integrase Inhibitors.

Authors:  Ronit R Dalmat; Negar Makhsous; Gregory G Pepper; Amalia Magaret; Keith R Jerome; Anna Wald; Alexander L Greninger
Journal:  J Clin Microbiol       Date:  2018-11-27       Impact factor: 5.948

10.  Analysis of HIV-1 diversity, primary drug resistance and transmission networks in Croatia.

Authors:  Maja Oroz; Josip Begovac; Ana Planinić; Filip Rokić; Maja M Lunar; Tomaž Mark Zorec; Robert Beluzić; Petra Korać; Oliver Vugrek; Mario Poljak; Snježana Židovec Lepej
Journal:  Sci Rep       Date:  2019-11-21       Impact factor: 4.379

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