Literature DB >> 28858289

Production of tunable nanomaterials using hierarchically assembled bacteriophages.

Ju Hun Lee1,2,3, Christopher M Warner4, Hyo-Eon Jin1,2,5, Eftihia Barnes6, Aimee R Poda4, Edward J Perkins4, Seung-Wuk Lee1,2,3.   

Abstract

Large-scale fabrication of precisely defined nanostructures with tunable functions is critical to the exploitation of nanoscience and nanotechnology for production of electronic devices, energy generators, biosensors, and bionanomedicines. Although self-assembly processes have been developed to exploit biological molecules for functional materials, the resulting nanostructures and functions are still very limited, and scalable synthesis is far from being realized. Recently, we have established a bacteriophage-based biomimetic process, called 'self-templating assembly'. We used bacteriophage as a nanofiber model system to exploit its liquid crystalline structure for the creation of diverse hierarchically organized structures. We have also demonstrated that genetic modification of functional peptides of bacteriophage results in structures that can be used as soft and hard tissue-regenerating materials, biosensors, and energy-generating materials. Here, we describe a comprehensive protocol to perform genetic engineering of phage, liter-scale amplification, purification, and self-templating assembly, and suggest approaches for characterizing hierarchical phage nanostructures using optical microscopy, atomic-force microscopy (AFM), and scanning electron microscopy (SEM). We also discuss sources of contamination, common mistakes during the fabrication process, and quality-control measures to ensure reproducible material production. The protocol takes ∼8-10 d to complete.

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Year:  2017        PMID: 28858289     DOI: 10.1038/nprot.2017.085

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  56 in total

1.  Bioluminescence in mesopelagic squid: diel color change during counterillumination.

Authors:  R E Young; F M Mencher
Journal:  Science       Date:  1980-06-13       Impact factor: 47.728

2.  Engineering phage materials with desired peptide display: rational design sustained through natural selection.

Authors:  Anna Merzlyak; Seung-Wuk Lee
Journal:  Bioconjug Chem       Date:  2009-12       Impact factor: 4.774

3.  Early osteogenic differentiation of mouse preosteoblasts induced by collagen-derived DGEA-peptide on nanofibrous phage tissue matrices.

Authors:  So Young Yoo; Masae Kobayashi; Phin Peng Lee; Seung-Wuk Lee
Journal:  Biomacromolecules       Date:  2011-02-23       Impact factor: 6.988

4.  Permanent polarity and piezoelectricity of electrospun α-helical poly(α-amino acid) fibers.

Authors:  Dawnielle Farrar; Kailiang Ren; Derek Cheng; Sungjoo Kim; Wonkyu Moon; William L Wilson; James E West; S Michael Yu
Journal:  Adv Mater       Date:  2011-07-28       Impact factor: 30.849

5.  Biologically templated photocatalytic nanostructures for sustained light-driven water oxidation.

Authors:  Yoon Sung Nam; Andrew P Magyar; Daeyeon Lee; Jin-Woong Kim; Dong Soo Yun; Heechul Park; Thomas S Pollom; David A Weitz; Angela M Belcher
Journal:  Nat Nanotechnol       Date:  2010-04-11       Impact factor: 39.213

6.  Biomimetic self-templating optical structures fabricated by genetically engineered M13 bacteriophage.

Authors:  Won-Geun Kim; Hyerin Song; Chuntae Kim; Jong-Sik Moon; Kyujung Kim; Seung-Wuk Lee; Jin-Woo Oh
Journal:  Biosens Bioelectron       Date:  2016-06-02       Impact factor: 10.618

7.  Biomimetic virus-based colourimetric sensors.

Authors:  Jin-Woo Oh; Woo-Jae Chung; Kwang Heo; Hyo-Eon Jin; Byung Yang Lee; Eddie Wang; Chris Zueger; Winnie Wong; Joel Meyer; Chuntae Kim; So-Young Lee; Won-Geun Kim; Marcin Zemla; Manfred Auer; Alexander Hexemer; Seung-Wuk Lee
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

8.  Ordering of quantum dots using genetically engineered viruses.

Authors:  Seung-Wuk Lee; Chuanbin Mao; Christine E Flynn; Angela M Belcher
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

9.  Phage-Based Structural Color Sensors and Their Pattern Recognition Sensing System.

Authors:  Ju Hun Lee; Benson Fan; Tuan D Samdin; David A Monteiro; Malav S Desai; Olivia Scheideler; Hyo-Eon Jin; Soyoun Kim; Seung-Wuk Lee
Journal:  ACS Nano       Date:  2017-04-03       Impact factor: 15.881

10.  "Dip-Pen" nanolithography

Authors: 
Journal:  Science       Date:  1999-01-29       Impact factor: 47.728

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  8 in total

1.  Improvements in the production of purified M13 bacteriophage bio-nanoparticle.

Authors:  Paolo Passaretti; Inam Khan; Timothy R Dafforn; Pola Goldberg Oppenheimer
Journal:  Sci Rep       Date:  2020-10-29       Impact factor: 4.379

Review 2.  Biophotonic probes for bio-detection and imaging.

Authors:  Ting Pan; Dengyun Lu; Hongbao Xin; Baojun Li
Journal:  Light Sci Appl       Date:  2021-06-09       Impact factor: 17.782

3.  Manipulation of the Superhydrophobicity of Plasma-Etched Polymer Nanostructures.

Authors:  Ke Du; Youhua Jiang; Yuyang Liu; Ishan Wathuthanthri; Chang-Hwan Choi
Journal:  Micromachines (Basel)       Date:  2018-06-18       Impact factor: 2.891

Review 4.  Nanoparticles for Stem Cell Therapy Bioengineering in Glioma.

Authors:  Henry Ruiz-Garcia; Keila Alvarado-Estrada; Sunil Krishnan; Alfredo Quinones-Hinojosa; Daniel M Trifiletti
Journal:  Front Bioeng Biotechnol       Date:  2020-12-07

5.  The Robust Self-Assembling Tubular Nanostructures Formed by gp053 from Phage vB_EcoM_FV3.

Authors:  Eugenijus Šimoliūnas; Lidija Truncaitė; Rasa Rutkienė; Simona Povilonienė; Karolis Goda; Algirdas Kaupinis; Mindaugas Valius; Rolandas Meškys
Journal:  Viruses       Date:  2019-01-11       Impact factor: 5.048

6.  Promotion of angiogenesis by M13 phage and RGD peptide in vitro and in vivo.

Authors:  Zohreh Safari; Sara Soudi; Nazli Jafarzadeh; Ahmad Zavaran Hosseini; Elham Vojoudi; Majid Sadeghizadeh
Journal:  Sci Rep       Date:  2019-08-01       Impact factor: 4.379

Review 7.  Advances in the Development of Phage-Based Probes for Detection of Bio-Species.

Authors:  Kameshpandian Paramasivam; Yuanzhao Shen; Jiasheng Yuan; Ibtesam Waheed; Chuanbin Mao; Xin Zhou
Journal:  Biosensors (Basel)       Date:  2022-01-07

8.  Genome-wide investigation of maize RAD51 binding affinity through phage display.

Authors:  Claire Milsted; Bo Dai; Nelson Garcia; Lu Yin; Yan He; Shahryar Kianian; Wojciech Pawlowski; Changbin Chen
Journal:  BMC Genomics       Date:  2022-03-12       Impact factor: 3.969

  8 in total

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