Literature DB >> 28856379

Vertebrate GAF/ThPOK: emerging functions in chromatin architecture and transcriptional regulation.

Avinash Srivastava1, Amitha Sampath Kumar1, Rakesh K Mishra2.   

Abstract

GAGA factor of Drosophila melanogaster (DmGAF) is a multifaceted transcription factor with diverse roles in chromatin regulation. Recently, ThPOK/c-Krox was identified as its vertebrate homologue (vGAF), which has a basic domain structure similar to DmGAF and is decorated with a number of post-translationally modified residues. In vertebrate genomes, vGAF associates with purine-rich GAGA sequences and performs diverse chromatin-mediated functions, viz., gene activation, repression and enhancer blocking. Expansion of regulatory chromatin proteins with the acquisition of PTMs appears to be the general trend that facilitated the evolution of complexity in vertebrates. Here, we compare the structural and functional features of vGAF with those of DmGAF and also assess the possible functional redundancy among paralogues of vGAF. We also discuss the underlying mechanisms which aid in the diverse and context-dependent functions of this protein.

Entities:  

Keywords:  Chromatin regulation; GAGA factor; ThPOK; ZBTB; c-Krox

Mesh:

Substances:

Year:  2017        PMID: 28856379     DOI: 10.1007/s00018-017-2633-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  86 in total

1.  GAGA can mediate enhancer function in trans by linking two separate DNA molecules.

Authors:  Tokameh Mahmoudi; Katerina R Katsani; C Peter Verrijzer
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

2.  A functionally conserved boundary element from the mouse HoxD locus requires GAGA factor in Drosophila.

Authors:  Dasari Vasanthi; Mamidi Anant; Surabhi Srivastava; Rakesh K Mishra
Journal:  Development       Date:  2010-12       Impact factor: 6.868

3.  The GAGA protein of Drosophila is phosphorylated by CK2.

Authors:  Carles Bonet; Irene Fernández; Xavier Aran; Jordi Bernués; Ernest Giralt; Fernando Azorín
Journal:  J Mol Biol       Date:  2005-08-19       Impact factor: 5.469

4.  Regulation of B versus T lymphoid lineage fate decision by the proto-oncogene LRF.

Authors:  Takahiro Maeda; Taha Merghoub; Robin M Hobbs; Lin Dong; Manami Maeda; Johannes Zakrzewski; Marcel R M van den Brink; Arthur Zelent; Hirokazu Shigematsu; Koichi Akashi; Julie Teruya-Feldstein; Giorgio Cattoretti; Pier Paolo Pandolfi
Journal:  Science       Date:  2007-05-11       Impact factor: 47.728

5.  Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein.

Authors:  L Keegan; G Gill; M Ptashne
Journal:  Science       Date:  1986-02-14       Impact factor: 47.728

6.  Chromatin remodeling mediated by Drosophila GAGA factor and ISWI activates fushi tarazu gene transcription in vitro.

Authors:  M Okada; S Hirose
Journal:  Mol Cell Biol       Date:  1998-05       Impact factor: 4.272

7.  KR-POK interacts with p53 and represses its ability to activate transcription of p21WAF1/CDKN1A.

Authors:  Bu-Nam Jeon; Min-Kyeong Kim; Won-Il Choi; Dong-In Koh; Sung-Yi Hong; Kyung-Sup Kim; Minjung Kim; Chae-Ok Yun; Juyong Yoon; Kang-Yell Choi; Kyung-Ryul Lee; Kenneth P Nephew; Man-Wook Hur
Journal:  Cancer Res       Date:  2012-01-17       Impact factor: 12.701

8.  Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression.

Authors:  Kalliopi Stratigi; Manouela Kapsetaki; Michalis Aivaliotis; Terrence Town; Richard A Flavell; Charalampos G Spilianakis
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-13       Impact factor: 11.205

9.  STaRRRT: a table of short tandem repeats in regulatory regions of the human genome.

Authors:  Katherine A Bolton; Jason P Ross; Desma M Grice; Nikola A Bowden; Elizabeth G Holliday; Kelly A Avery-Kiejda; Rodney J Scott
Journal:  BMC Genomics       Date:  2013-11-15       Impact factor: 3.969

10.  A functionally conserved Polycomb response element from mouse HoxD complex responds to heterochromatin factors.

Authors:  Dasari Vasanthi; A Nagabhushan; Navneet Kaur Matharu; Rakesh K Mishra
Journal:  Sci Rep       Date:  2013-10-22       Impact factor: 4.379

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  4 in total

1.  Activation of Su(Hw)-Controlled Genes Is Associated with Increase in GAF Binding.

Authors:  P V Elizar'ev; D A Chetverina; L S Melnikova; A Srivastava; R K Mishra; A K Golovnin; P G Georgiev; M M Erokhin
Journal:  Dokl Biochem Biophys       Date:  2019-11-25       Impact factor: 0.788

2.  Interactome of vertebrate GAF/ThPOK reveals its diverse functions in gene regulation and DNA repair.

Authors:  Avinash Srivastava; Rakesh K Mishra
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 3.  GAGA factor: a multifunctional pioneering chromatin protein.

Authors:  Darya Chetverina; Maksim Erokhin; Paul Schedl
Journal:  Cell Mol Life Sci       Date:  2021-02-02       Impact factor: 9.261

4.  The control of transcriptional memory by stable mitotic bookmarking.

Authors:  Maëlle Bellec; Jérémy Dufourt; George Hunt; Hélène Lenden-Hasse; Antonio Trullo; Amal Zine El Aabidine; Marie Lamarque; Marissa M Gaskill; Heloïse Faure-Gautron; Mattias Mannervik; Melissa M Harrison; Jean-Christophe Andrau; Cyril Favard; Ovidiu Radulescu; Mounia Lagha
Journal:  Nat Commun       Date:  2022-03-04       Impact factor: 17.694

  4 in total

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