Literature DB >> 28856178

Histone deacetylases and their roles in mineralized tissue regeneration.

Nam Cong-Nhat Huynh1, Vincent Everts2, Ruchanee Salingcarnboriboon Ampornaramveth3.   

Abstract

Histone acetylation is an important epigenetic mechanism that controls expression of certain genes. It includes non-sequence-based changes of chromosomal regional structure that can alter the expression of genes. Acetylation of histones is controlled by the activity of two groups of enzymes: the histone acetyltransferases (HATs) and histone deacetylases (HDACs). HDACs remove acetyl groups from the histone tail, which alters its charge and thus promotes compaction of DNA in the nucleosome. HDACs render the chromatin structure into a more compact form of heterochromatin, which makes the genes inaccessible for transcription. By altering the transcriptional activity of bone-associated genes, HDACs control both osteogenesis and osteoclastogenesis. This review presents an overview of the function of HDACs in the modulation of bone formation. Special attention is paid to the use of HDAC inhibitors in mineralized tissue regeneration from cells of dental origin.

Entities:  

Keywords:  ADSCs, adipose tissue-derived stem cells; ALP, alkaline phosphatase; BSP, bone sialoprotein; Bone regeneration; COL1, type I collagen; DMP1, dentin matrix acidic phosphoprotein 1; DPSCs, dental-derived stem cells; DSPP, dentin sialophosphoprotein; Dentin formation; Epigenetic; GSK-3, glycogen synthase kinase; HAT, histone acetyltransferase; HDAC, histone deacetylase; Histone acetyltransferase; Histone deacetylase; MSCs, mesenchymal stem cells; NaB, sodium butyrate; OCN, osteocalcin; OPN, osteopontin; PCL/PEG, polycaprolactone/polyethylene glycol; RUNX2, runt-related transcription factor 2; SOST, sclerostin; TGF-β/BMP, transforming growth factor-β/bone morphogenetic protein; TSA, Trichostatin A; VPA, valproic acid; WNT/β-catenin, Wingless-int; hPDLCs, human periodontal ligament cells

Year:  2017        PMID: 28856178      PMCID: PMC5565747          DOI: 10.1016/j.bonr.2017.08.001

Source DB:  PubMed          Journal:  Bone Rep        ISSN: 2352-1872


Introduction

Epigenetics is important in regulating the differentiation of different types of cells in both prenatal and postnatal development. It is the mechanism by which the expression of genes in the genome can be regulated without altering the base sequence of DNA. This includes chromatin remodeling, DNA methylation, histone modifications and the expression of non-coding RNA (Vrtacnik et al., 2014). Epigenetics regulate changes in gene expression and determine the fate of cells in response to environmental, developmental and metabolic cues (Arnsdorf et al., 2010). Of the epigenetic mechanisms mentioned above, histone modification by acetylation has been shown to be important for regulating cellular function (Kruhlak et al., 2001). Histone modification by acetylation is able to induce an open chromatin structure, which correlates with gene activation. Histone deacetylation, however, results in a condensation of chromatin which is related to transcriptional repression. These two processes, acetylation and deacetylation, are controlled by two distinctive groups of enzymes: histone acetyltransferases (HATs) and histone deacetylases (HDACs) (Buchwald et al., 2009, de Ruijter et al., 2003). Different HATs/HDACs display different mechanisms of histone substrate binding and catalysis. In general, HATs transfer an acetyl group onto lysine residues of histone tails while HDACs remove acetyl group leading to histone hypoacetylation. Inhibition of HDACs accelerated osteoblast differentiation but decreased osteoclastogenesis (Cho et al., 2005, Schroeder and Westendorf, 2005, Xu et al., 2009). This was found with different cell types such as osteoblasts, bone marrow mesenchymal cells, adipose-derived stromal cells, and macrophages (Cho et al., 2005, Schroeder and Westendorf, 2005, Xu et al., 2009). Study demonstrated the important role of HDACs in maintaining the balance between osteoblastic bone formation and osteoclastic bone resorption; processes crucial for bone tissue homeostasis (Destaing et al., 2005). During the course of osteogenic differentiation of mesenchymal pre-osteoblasts with an HDAC inhibitor, osteoblast-related gene expression, and bone nodule formation were accelerated (Huynh et al., 2016). In vivo bone regeneration potential of periodontal ligament-derived pre-osteoblasts in mouse calvaria defects was also enhanced by pretreating these cells with an HDAC inhibitor (Huynh et al., 2016, Huynh et al., 2017). These data indicate HDACs as important epigenetic factors that drive mineral tissue regeneration.

Epigenetics and histone acetylation

Epigenetic mechanisms are able to regulate nuclear activities which are crucial for certain cellular activities associated with cell fate determination including gene transcription, DNA repair and replication. Hence, they play a role in cell maintenance and differentiation (Zhao et al., 2008). Nucleosomes are the basic molecular units of chromatin. They consist of 145–147 bp of DNA and are wrapped nearly twice around a histone octamer. The histone octamers are composed of two molecules of each histone H2A, H2B, H3, and H4. Histone H1 is positioned adjacent to the nucleosomes via a linker. The histones are required for folding of DNA to form the higher-order chromatin structure. This chromatin structure is dynamic and can be switched back and forth between loosely packed euchromatin, and tightly packed heterochromatin. The loosely packed euchromatin is more accessible for the transcriptional apparatus to bind and activate transcription of particular genes. The structure of tightly packed heterochromatin physically limits access of transcriptional complexes to DNA which leads to transcriptional inactivity (Fig. 1) (Alberts, 2010). The transition between the euchromatin and heterochromatin state is partly regulated by epigenetic mechanisms which require concert action of chromatin-modifying enzymes. Among these epigenetic mechanisms, acetylation is the only modification that directly causes a structural relaxation of chromatin by neutralizing the charge of histones (Gregory et al., 2001). Other modifications such as histone methylation, phosphorylation act as docking sites that promote recruitment and stabilization of effector protein complexes. The H3 and H4 histone tails are the main targets for acetylation and methylation, primarily at lysine and arginine residues. Methylation and acetylation of specific lysine residues on histones have defined roles in regulating gene expression by recruiting other protein complexes for transcription (Barrero et al., 2010, Gordon et al., 2014).
Fig. 1

Nucleosome and chromatin modification via histone acetylation. A) A nucleosome includes DNA wrapping around a histone octamer, containing two molecules of each histone H2A, H2B, H3, H4; acetyl group such as Lysin 9 (K9) on histone tail. B) Transcriptional inactivation and activation via the acetylation of histones which controls by HAT (activation) and HDAC (inactivation). HATs transfer the acetyl moiety to histone tail and HDACs remove this group from the histones comprising the nucleosome.

Nucleosome and chromatin modification via histone acetylation. A) A nucleosome includes DNA wrapping around a histone octamer, containing two molecules of each histone H2A, H2B, H3, H4; acetyl group such as Lysin 9 (K9) on histone tail. B) Transcriptional inactivation and activation via the acetylation of histones which controls by HAT (activation) and HDAC (inactivation). HATs transfer the acetyl moiety to histone tail and HDACs remove this group from the histones comprising the nucleosome. There are several important positions for acetylation including Lys9, Lys14, Lys27 on histone H3, and Lys5, Lys8, Lys12 and Lys16 on histone H4, which are involved in the formation of permissive chromatin structure (Bjerling et al., 2002, Yan and Boyd, 2006). In general, there are three possible mechanisms by which histone acetylation regulates transcription (Shukla et al., 2008). Acetylation of specific lysine residues in the histone tails neutralizes its positive charge and unwinds the DNA-histone interactions (Gregory et al., 2001). Acetylation also serves as a signal that recruits certain chromatin or transcription-associated proteins called bromodomains to specifically read the signal and render chromatin remodeling resulting in the activation of transcription (Zeng and Zhou, 2002). Lastly, histone tails undergo modifications in various ways for example acetylation, methylation, phosphorylation and ubiquitination. These histone tail modifications form a code that is read by cellular machineries. This code is called “histone code” which serves as chromatin-template beyond the genetic code of the DNA template. In detail, distinct histone amino-terminal modifications can generate synergistic or antagonistic interaction affinities for chromatin-associated proteins, which in turn dictate dynamic transitions between transcriptionally active or transcriptionally silent chromatin states (Shukla et al., 2008, Jenuwein and Allis, 2001).

The function of histone acetylases and deacetylases

As indicated above, the acetylation and deacetylation of histones is controlled by HATs and HDACs, respectively. HATs transfer an acetyl group from acetyl coenzyme A (acetyl-CoA) onto the ε-amino groups of conserved lysine residues within the core histones. Based on their cellular origin and function, the HATs family is divided into two different classes, type A and type B. Type A HATs locate in the nucleus and are involved in the regulation of gene expression through acetylation of nucleosomal histones. Type B HATs are located in the cytoplasm and are responsible for acetylating newly synthesized histones, which are then transported from the cytoplasm to the nucleus before their interaction with newly replicated DNA. Type A HATs contain a bromodomain which helps these enzymes to recognize and bind to acetylated lysine residues on histone substrates. The acetyl groups added by type B HATs to the histones are removed by HDACs once they enter the nucleus, but before their incorporation into chromatin (Roth et al., 2001). The eighteen members of the human HDACs family are divided into two groups based on their Zn2 + and NAD+-dependency. The Zn2 +-dependent subfamily includes the class I HDACs (HDAC 1, 2, 3, and 8) that are widely expressed in many cell types (Suzuki, 2009). Class IIa (HDAC 4, 5, 7, 9), class IIb (HDAC 6 and 10) and class IV (HDAC 11) are expressed in a more tissue-specific fashion (Table 1). The Zn2-dependent members of HDACs remove acetyl group from the histones comprising the nucleosome leading to histone hypoacetylation. This results in a smaller space between the histones and the DNA wrapped around it. In addition to histone modification, some HDACs can act on non-histone proteins as well. For example, inhibition of HDAC decelerated the acetylation of HSP90 by inhibiting its associated HDAC6. This resulted in a limitation of HSP90 chaperone function (Drysdale et al., 2006). Using vorinostat to inhibit HDACs altered about 10% of acetylation sites in a total of 3600 lysine acetylation sites on 1750 proteins (Choudhary et al., 2009). Regulated mainly by acetyltransferase, lysine acetylation sites in proteins were proven to play an important role in diverse cellular processes, such as chromatin remodeling, cell cycle progression, splicing, nuclear transport, actin nucleation as well as in gene expression, DNA damage repair, cytoskeleton function, protein chaperone, and ribosome formation and function (Choudhary et al., 2009, Haberland et al., 2009).
Table 1

Summary of Zn2 +-dependent HDACs subfamilies. SM—skeletal muscle; B—brain; PL—platelet; L—liver; K—kidney; S—spleen; H—heart; PA—pancreas.

HDACLocalizationMajor tissue distributionFunction (partly)
Class I
 HDAC 1NucleusUbiquitousTranscriptional repressionCell survival, proliferation and differentiation
 HDAC 2
 HDAC 3
 HDAC 8Suppress osteogenic differentiation
Class IIa
 HDAC 4Nucleus/cytoplasmH, SM, BTranscriptional repressionChondrocyte and osteocyte development differentiation
 HDAC 5Transcriptional repressionMuscle differentiation blockCardiac and vascular endothelial function
 HDAC 7H, PL, PA, SMInhibit osteoclast differentiationThymocyte differentiation
 HDAC 9SM, B
Class IIb
 HDAC 6Mainly cytoplasmH, L, K, PATubulin-deacetylase
 HDAC 10L, S, KUnknown
Class IV
 HDAC 11Nucleus/cytoplasmB, H, SM, KImmuno-regulation
Summary of Zn2 +-dependent HDACs subfamilies. SM—skeletal muscle; B—brain; PL—platelet; L—liver; K—kidney; S—spleen; H—heart; PA—pancreas. To inhibit HDACs by blocking access to their active site, several natural and synthetic inhibitors have been identified. Typically, HDAC inhibitors contain similar structural characteristics including: a zinc-binding group which coordinates the zinc ion in the active site, a cap substructure which interacts with amino acids at the entrance of the N-acetylated lysine binding channel of HDAC, and a linker connecting the cap and the zinc-binding group at a proper distance (Fig. 2) (Suzuki, 2009). Inhibitors function by displacing the zinc ion at the catalytic domain of HDAC and thereby rendering the charge-relay system dysfunctional. The inhibitors can be divided into several structural classes including hydroxamates, cyclic peptides, aliphatic acids, and benzamides (de Ruijter et al., 2003, Suzuki, 2009).
Fig. 2

Structural characteristics of HDAC inhibitors and the example structure of Trichostatin A (TSA). The CO and OH groups are thought to chelate the zinc ion in the active site of HDAC in a bidentate fashion.

Structural characteristics of HDAC inhibitors and the example structure of Trichostatin A (TSA). The CO and OH groups are thought to chelate the zinc ion in the active site of HDAC in a bidentate fashion. HDAC inhibitors induce an accumulation of acetylated histones and other non-histone proteins. The structural alteration of histone proteins alters several biological processes including regulation of gene expression, cell proliferation, cell migration, and cell death. The exact mechanisms involved in these processes are not fully understood. Owing to the effect in regulating cellular function, many studies demonstrated that HDAC inhibitors can cure cancer, inflammation, and nerve degradation after brain injury in vivo (Zhang et al., 2008, Dash et al., 2009, Witt et al., 2009, Toussirot et al., 2010, Lu et al., 2011). Some of the inhibiting compounds have entered into clinical trials such as Trichostatin A (TSA), sodium butyrate (NaB), SAHA, phenylbutyrate, depsipeptide, pyroxamide, valproic acid (VPA). In addition to pan-inhibitors which act on many HDAC members leading to a wide range of effects in patients, a number of selective HDAC inhibitors are effortful studied that could be advantageous for specific clinical use (Witt et al., 2009).

Histone deacetylase role in mineralized tissue formation

Role of HDACs in osteoblasts and MSCs

HDACs have been shown to be involved in osteoblast differentiation and maturation (Westendorf et al., 2002, Vega et al., 2004, Xu et al., 2013, Westendorf, 2007). Besides their effect on histone proteins, HDACs also catalyze deacetylation of non-histone proteins especially of transcription factors that drive bone formation. Posttranslational modifications, such as acetylation, of these transcription factors can alter their transcriptional activity and stability. Several studies have reported the interaction of RUNX2, the important transcription factor regulating osteoblast phenotypes, with HDACs and these interactions seem to be crucial for modulating osteoblastic differentiation. For example, Westendorf et al. showed that HDAC6 binds to Runx2 in differentiating osteoblasts and this interaction is necessary for repression of the p21 promoter in preosteoblasts (Westendorf et al., 2002). HDAC 1 and 3 are transcriptional co-repressors of osteoblast differentiation by interacting with RUNX2, to modulate its downstream genes like osteocalcin (Schroeder et al., 2004, Lee et al., 2006). Several studies showed that HDAC 3 can bind to RUNX2, nuclear factor of activated T cells (NFATc1), T-cell factor (TCF) and zinc finger protein 521 (Zfp521). These bindings seem to regulate osteoblast differentiation by suppressing osteoblast-related gene expression (Schroeder et al., 2004, Choo et al., 2009, Hesse et al., 2010). Being reported as a novel transcriptional co-repressor of Runx2, HDAC7 associates with Runx2 and represses its transcriptional activity. Runx2 repression induced by HDAC7 occurs in a deacetylase-independent manner in which the catalytic domain of HDAC 7 is not required thus demonstrating a distinctive action of HDAC7 (Jensen et al., 2008). Besides direct interaction with transcriptional factor, HDACs have also been reported to exert their functions by regulating chromatin structure which results in the modification of transcriptional activity of osteoblast-related genes. During osteoblast differentiation, recruitment of HDAC 1 to the promoter regions of osterix and osteocalcin decreased, whereas recruitment of p300, a HAT, to those promoters was enhanced remarkably (Lee et al., 2006). Studies showed that histone H3 and H4 acetylation at promoter and coding regions of the osteocalcin gene were associated with osteocalcin transcriptional activation in mature osteoblasts. The results suggest a functional linkage of histone H3 and H4 acetylation that renders chromatin remodeling across specific regions of the OCN promoter accompanying with tissue-specific transcriptional activation (Shen et al., 2002, Shen et al., 2003). During normal osteoblast differentiation, hyperacetylation of histones has been noted at the osteocalcin gene promoter and the acetylation increased under the influence of an HDAC inhibitor (Xu et al., 2013, Shen et al., 2003, Hu et al., 2013). The increase of histone H3 acetylation at lysines K9/K14 during osteogenic differentiation induced by inhibition of HDAC activity even enhanced the process (Huynh et al., 2016). As mentioned, epigenetics including histone acetylation plays an important role in cell proliferation and differentiation. Among these, histone modification by acetylation regulates osteogenesis by mesenchymal cells. Osteogenic differentiation of human adipose tissue-derived stromal cells, bone marrow stromal cells, and MC3T3-E1 cells have been shown to be accelerated by several types of HDAC inhibitors including VPA, TSA, and NaB (Table 2) (Schroeder and Westendorf, 2005, Xu et al., 2009). With human mesenchymal stem cells (hMSCs), an HDAC inhibitor can promote or inhibit cell differentiation (Lee et al., 2009). Despite being inefficient to boost adipogenic, chondrogenic, and neurogenic differentiation, VPA and NaB did enhance osteogenic differentiation. For example, HDAC inhibitors can block adipogenesis by affecting the acetylation state of adipogenic transcription factors C/EBPβ, ultimately reducing its DNA-binding affinity and transcriptional activation potential (Haberland et al., 2010).
Table 2

The effect of HDAC inhibitors on osteogenesis and osteoclastogenesis of various cell types.

InhibitorCell typeEffectMechanismRef
VPAAdiposeBone marrowOsteogenesisIncrease OSX, OPN, BMP2, RUNX2, ALP(Cho et al., 2005)
VPABone marrow stromal cellsOsteogenesisIncrease acetylation of H3K9 via HDAC 8 regulation(Jeon et al., 2006)
VPADental pulp stem cellsOsteogenesisDown-regulate HDAC 2Increase OC, BSP, and OPN(Shen et al., 2002)
VPANaBAdiposeUmbilical cordOsteogenesisIncrease p21CIP1/WAF1(Lee et al., 2009)
VPANaBAdipose-derived stromal cellsOsteogenesisIn reduced oxygen tension(Xu et al., 2009)
NaBPrimary bone marrow cellsOsteogenesisRegulation of HDAC1Increase Runx2, OC, OPN, and ALP(Hesse et al., 2010)
VPATSAMurine dental pulp–derived cell lineOsteogenesisIncrease DMP-1, BMP-4(Duncan et al., 2012)
TSADental pulp stem cellsOdontoblast differentiationUp-regulate phospho-Smad2/3, Smad4, and nuclear factor I-C(Jin et al., 2013)
TSAHuman periodontal ligament cellsOsteogenesis bone regenerationReduction of HDAC1, 2, 3Increase acetylation of H3K9K14 and RUNX2(Huynh et al., 2016)
SAHAOsteoblast precursorPrimary osteoblastOsteogenesisIncreased MMP-13(Duncan et al., 2016a)
The effect of HDAC inhibitors on osteogenesis and osteoclastogenesis of various cell types. HDAC inhibitors could induce the expression of osteotropic factors such as BMP-2 and BMP-4 by hMSCs and ADSCs (adipose tissue-derived stem cells) (Xu et al., 2013, Hu et al., 2013). Several HDAC inhibitors such as NBu, VPA, TSA, CHAP27 and SCOP402 also up-regulated RUNX2 protein and its acetylation (Huynh et al., 2016, Kim et al., 2013, Fu et al., 2014, Jeon et al., 2006). The increase in acetylation level of this protein has been shown to correlate with a functional increase since RUNX2 acetylation is required for its transcriptional activity (Jeon et al., 2006). Together, the data indicate that inhibition of HDAC sufficiently promotes osteogenic differentiation of mesenchymal cells but different HDAC forming complexes with various transcription-related proteins may have distinct roles during the process (Westendorf, 2007).

Role of HDACs in tooth-derived cells

Similar to mesenchymal cells, dental-derived stem cells (DPSCs) have drawn attention because of their accessibility, plasticity, and high proliferative ability (Huang et al., 2010). In fact, these cells are osteoblast-like and are able to differentiate into osteo/odontoblasts under appropriate stimulation (Eroschenko, 2008, Garant, 2003, Fitzgerald et al., 1990). These cells as well as periodontal ligament cells (PDLCs) display a great potential for cell-based tissue engineering, especially for bone regeneration (Rodriguez-Lozano et al., 2012) (Fig. 3). Studies showed that HDAC inhibitors such as NaB and VPA up-regulated osteoblast-related gene expression of DPSCs (Paino et al., 2014). VPA was shown to enhance matrix mineralization by increasing OPN and BSP expression; an effect that correlated with inhibition of HDAC 2 (Paino et al., 2014). TSA, another pan HDAC inhibitor, promoted proliferation and differentiation of odontoblasts via an up-regulation of phospho-Smad2/3, Smad4, and nuclear factor I-C in DPSCs (Jin et al., 2013). VPA and TSA promoted osteogenic differentiation of DPSCs via an increased expression of DMP-1, BMP-2/-4 and Nestin (Duncan et al., 2013). In a murine dental pulp-derived cell line (MDPC-23), VPA and TSA significantly increased the expression of dentine matrix protein-1 (Duncan et al., 2012). In both a dental-papillae derived cell-line and primary DPSCs, HDAC inhibitor-induced expression of specific dentin marker genes was demonstrated. This may result in an increase in mineralization (Duncan et al., 2012, Duncan et al., 2016a). For example, VPA and TSA induced p21WAF1/CIP and DMP-1 expression leading to enhanced mineralization. SAHA, another pan HDAC inhibitor, promoted mineralization and migration in DPSCs by inducing the expression and activity of metalloproteinase (MMP)-13. The latter enzyme may influence cell migration and cleave matrix-bound dentin matrix proteins to increase chemotaxis and differentiation of pulp cells at the injury site (Duncan et al., 2012, Duncan et al., 2016a).
Fig. 3

Suggested expression fashion of bone related markers and HDACs in hPDLs (Huynh et al., 2016, Kim et al., 2013) A) and DPSCs (Paino et al., 2014, Jin et al., 2013) B) during odonto-osteogenic differentiation. (RUNX2, runt-related transcription factor 2; OSX: osterix; COL1, type I collagen; ALP, alkaline phosphatase; BSP, bone sialoprotein; OCN, osteocalcin; OPN, osteopontin; DMP1, dentin matrix acidic phosphoprotein 1; DSPP, dentin sialophosphoprotein; SOST, sclerostin; Ac: acetylation; H3: Histone H3; K9, K14: Lysine 9, 14.)

Suggested expression fashion of bone related markers and HDACs in hPDLs (Huynh et al., 2016, Kim et al., 2013) A) and DPSCs (Paino et al., 2014, Jin et al., 2013) B) during odonto-osteogenic differentiation. (RUNX2, runt-related transcription factor 2; OSX: osterix; COL1, type I collagen; ALP, alkaline phosphatase; BSP, bone sialoprotein; OCN, osteocalcin; OPN, osteopontin; DMP1, dentin matrix acidic phosphoprotein 1; DSPP, dentin sialophosphoprotein; SOST, sclerostin; Ac: acetylation; H3: Histone H3; K9, K14: Lysine 9, 14.) Recently, we reported the expression of HDACs by human PDLCs (hPDLCs) and some of these enzymes, predominantly class I (HDAC 1, 2, 3) were down regulated during osteogenic differentiation. Culturing of hPDLCs with TSA resulted in an increased acetylation of H3K9K14 (Histone H3, Lysine 9, 14), and RUNX2 which associated with an increased expression of bone-related genes (Huynh et al., 2016). TSA enhanced in vivo bone formation by hPDLCs in a mouse calvarial defect model (Huynh et al., 2017). These findings strongly suggest a role of these enzymes in modulating the osteogenic differentiation potential of hPDLCs signifying attractive candidates for regenerative therapy (Fig. 4). Likewise, TNF-α stimulated PDL stem cells had a high expression of HDACs. Inhibition the enzymes activity by TSA significantly promoted the osteogenic differentiation potential of the cells in inflammatory microenvironment (Wang et al., 2016). The expression pattern of HDACs along with bone related markers during the course of osteogenic differentiation of hPDLs and DPSCs are schematically shown in Fig. 3. This data might emphasize a specific role of these enzymes in distinctive sets of dental-derived cells during odonto-osteogenic differentiation (Huynh et al., 2016, Huynh et al., 2017, Jin et al., 2013).
Fig. 4

Mechanism of HDAC inhibitor TSA in osteogenic differentiation of hPDLCs. TSA inhibits HDAC enzymes, including the reduction of HDAC1, 2, 3 leading to the acetylation of H3K9K14 and production and acetylation of RUNX2 and which activate bone-related gene expression. Then, the cells go to osteogenesis (H3: Histone H3; K9, K14: Lysine 9, 14) (Huynh et al., 2016, Huynh et al., 2017).

Mechanism of HDAC inhibitor TSA in osteogenic differentiation of hPDLCs. TSA inhibits HDAC enzymes, including the reduction of HDAC1, 2, 3 leading to the acetylation of H3K9K14 and production and acetylation of RUNX2 and which activate bone-related gene expression. Then, the cells go to osteogenesis (H3: Histone H3; K9, K14: Lysine 9, 14) (Huynh et al., 2016, Huynh et al., 2017).

HDAC application in mineralized tissue regenerative therapy

Up to date, several HDAC inhibitors are used in clinical trials to cure diseases such as cancer, inflammation, and nerve degradation after brain injury (Zhang et al., 2008, Witt et al., 2009, Toussirot et al., 2010, Dash et al., 2010). These inhibitors are also considered in tissue engineering like bone regeneration therapy. Tissue engineering involves the replacement of organs or the repair of damaged tissues. Bone graft substitutes are materials used to form/replace bone in the body. Recent technology mainly focused on improving the osteogenic potential of bone grafting materials either by incorporating osteoprogenitor cells or growth factors into a scaffold made of various materials (Polo-Corrales et al., 2014). Paino et al. investigated the response of DPSCs to VPA in an environment that mimicked 3D bone tissue (Paino et al., 2014). In the samples pre-treated with VPA, collagen and calcium deposits were much more intense and diffusely distributed in a rotating collagen scaffold system. Schroeder and Westendorf showed that HDAC inhibitors promoted osteoblast maturation in calvariae by increasing their ALP activity ex vivo (Schroeder and Westendorf, 2005). Recently, Huynh et al., demonstrated that a treatment with a single dose of TSA enhanced mineral deposition of hPDLCs in a polycaprolactone/polyethylene glycol (PCL/PEG) scaffold in vitro (Huynh et al., 2017). For in vivo bone regeneration, intraperitoneal injection of vorinostat into C57BL mice increased serum osteocalcin levels and osteoblast numbers of endocortical and trabecular bone surfaces (Xu et al., 2013). Jin et al. demonstrated that TSA affected odontoblast differentiation and dentin formation by inducing an increased number of odontoblasts, thicker dentin and a higher DSP expression (Jin et al., 2013). Because HDAC suppression enhances osteogenic differentiation, it seems possible to develop tissue-targeted inhibitors for treatment of bone-related diseases or a controlled release inhibitor for bone regenerative treatment. Recently, Neves et al. introduced a model of collagen sponges to deliver low doses of glycogen synthase kinase (GSK-3) antagonists to promote the natural processes of reparative dentine formation (Neves et al., 2017). The study shares the similar approach with our previous study on using HDAC inhibitor-loaded scaffold for bone regeneration in vivo (Huynh et al., 2017). These relatively simple methods potentially provide a novel approach for repair of the tooth/dentin structure. Several studies reported a role of HDAC inhibitors in odontoblast differentiation and dentin formation in vitro and in vivo (Jin et al., 2013, Duncan et al., 2016a). HDAC inhibitor-induced DPSC promoted the mineralization and migration, thus proposing HDAC inhibitors as potential candidate molecules to induce nearby progenitor cells in the pulp to differentiate and to participate in the formation of reparative dentine (Jin et al., 2013, Duncan et al., 2016a). This highlights the potential benefit of applying HDAC inhibitors to damaged tissue during regenerative dentin therapy (Duncan et al., 2016b). HDAC inhibitors may be used in combination with vehicle and/or natural/synthetic scaffolds to regulate the target cells in the aspect of mineral tissue regeneration (Fig. 5).
Fig. 5

Application of HDAC inhibitor in bone regeneration in mouse calvarial defect model. The combination of inhibitor, mesenchymal cells and co-polymer scaffold (PCL/PEG) induce new bone formation (Huynh et al., 2017).

Application of HDAC inhibitor in bone regeneration in mouse calvarial defect model. The combination of inhibitor, mesenchymal cells and co-polymer scaffold (PCL/PEG) induce new bone formation (Huynh et al., 2017). Yet, there are some controversies regarding the effect of HDAC inhibitors. While in vitro studies demonstrated that HDAC inhibitors promote osteogenic differentiation, a clinical study reported a decrease in bone mineral density in patients treated with HDAC inhibitors during cancer treatment as well as systemic effect of HDACs inhibition (McGee-Lawrence and Westendorf, 2011). The observed phenotype of smaller pharyngeal teeth in transgenic zebrafish embryos reveals the effects of endocrine disrupting chemicals, such as VPA and TSA. Since HDAC can bind to corepressors of nuclear receptors, it has been proposed that HDAC inhibition disrupts retinoid signaling pathway leading to deficiency of pharyngeal teeth development (Li et al., 2016). In heterozygous Runx2 null mice, MS-275, a HDAC class I inhibitor, partially prevents delayed cranial suture closure in cleidocranial dysplasia disorder. This effect was related to the decreased number of progenitor cells as well as the delayed osteogenic differentiation in Runx2 mutation disorder. MS-275 could compensate for genetic insufficiency of Runx2 in Runx2a −/− mice. Therefore, the use of this drug represents a promising chemopreventive strategy for certain genetic diseases like cleidocranial dysplasia (Bae et al., 2017). HDAC 3 conditional knockout mice in osterix-expressing progenitor cells (HDAC 3 CKOOSX) were runty and had severe deficits in intramembranous and endochondral bone formation (Razidlo et al., 2010). In these mice, bone formation was decreased whereas bone marrow adipocyte differentiation was promoted. Moreover, HDAC 3 conditional knockout mice (HDAC 3 CKOOCN) were of normal size and weight but progressively lost trabecular and cortical bone mass with age (McGee-Lawrence et al., 2013). These findings therefore suggest a positive role of HDAC 3 on osteogenesis. HDAC 3 has been reported to be down-regulated during the onset of osteogenic differentiation of hPDLCs. Treatment with TSA, a pan HDAC inhibitor, enhanced osteogenic differentiation of hPDLCs while it reduced the expression of HDAC 3. These data thus propose an opposite role of HDAC 3 in regulating the osteogenic differentiation of distinctive groups of pre-osteoblasts (Huynh et al., 2016). Since HDACs are active in numerous cell types and tissues, it is important to develop selective inhibitors and targeted delivery methods to control the actions of these enzymes.

Conclusion

A precise control of gene expression is essential for proper development, differentiation, function, and homeostasis. Several data indicate a potential role of HDACs and their inhibitors in odonto-osteoblast differentiation and bone remodeling. These enzymes are considered a target for future therapeutic use in patients with bone/tooth defect.

Disclosures

None.
  65 in total

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Authors:  Eric Toussirot; Kashif Aziz Khan; Ewa Bertolini; Daniel Wendling; Georges Herbein
Journal:  Joint Bone Spine       Date:  2010-08-21       Impact factor: 4.929

Review 2.  Histone deacetylase inhibitors: a chemical genetics approach to understanding cellular functions.

Authors:  Paul A Marks
Journal:  Biochim Biophys Acta       Date:  2010-06-08

3.  Induction of osteogenic differentiation of human mesenchymal stem cells by histone deacetylase inhibitors.

Authors:  Hyun Hwa Cho; Hyung Taek Park; Yeon Jeong Kim; Yong Chan Bae; Kuen Taek Suh; Jin Sup Jung
Journal:  J Cell Biochem       Date:  2005-10-15       Impact factor: 4.429

Review 4.  Histone deacetylases (HDACs): characterization of the classical HDAC family.

Authors:  Annemieke J M de Ruijter; Albert H van Gennip; Huib N Caron; Stephan Kemp; André B P van Kuilenburg
Journal:  Biochem J       Date:  2003-03-15       Impact factor: 3.857

5.  Redundant control of adipogenesis by histone deacetylases 1 and 2.

Authors:  Michael Haberland; Michele Carrer; Mayssa H Mokalled; Rusty L Montgomery; Eric N Olson
Journal:  J Biol Chem       Date:  2010-02-26       Impact factor: 5.157

6.  Histone acetylation in vivo at the osteocalcin locus is functionally linked to vitamin D-dependent, bone tissue-specific transcription.

Authors:  Jiali Shen; Martin Montecino; Jane B Lian; Gary S Stein; Andre J Van Wijnen; Janet L Stein
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

7.  Histone deacetylase 3 interacts with runx2 to repress the osteocalcin promoter and regulate osteoblast differentiation.

Authors:  Tania M Schroeder; Rachel A Kahler; Xiaodong Li; Jennifer J Westendorf
Journal:  J Biol Chem       Date:  2004-08-02       Impact factor: 5.157

8.  Histone deacetylase inhibitors epigenetically promote reparative events in primary dental pulp cells.

Authors:  Henry F Duncan; Anthony J Smith; Garry J P Fleming; Paul R Cooper
Journal:  Exp Cell Res       Date:  2013-04-03       Impact factor: 3.905

9.  Promotion of natural tooth repair by small molecule GSK3 antagonists.

Authors:  Vitor C M Neves; Rebecca Babb; Dhivya Chandrasekaran; Paul T Sharpe
Journal:  Sci Rep       Date:  2017-01-09       Impact factor: 4.379

10.  Histone deacetylase inhibition with valproic acid downregulates osteocalcin gene expression in human dental pulp stem cells and osteoblasts: evidence for HDAC2 involvement.

Authors:  Francesca Paino; Marcella La Noce; Virginia Tirino; Pasqualina Naddeo; Vincenzo Desiderio; Giuseppe Pirozzi; Alfredo De Rosa; Luigi Laino; Lucia Altucci; Gianpaolo Papaccio
Journal:  Stem Cells       Date:  2014-01       Impact factor: 6.277

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  14 in total

1.  Peonidin-3-O-glucoside and cyanidin increase osteoblast differentiation and reduce RANKL-induced bone resorption in transgenic medaka.

Authors:  Zhitao Ren; Nishikant A Raut; Temitope O Lawal; Shital R Patel; Simon M Lee; Gail B Mahady
Journal:  Phytother Res       Date:  2021-10-26       Impact factor: 5.878

2.  GelMA Hydrogel Reinforced with 3D Printed PEGT/PBT Scaffolds for Supporting Epigenetically-Activated Human Bone Marrow Stromal Cells for Bone Repair.

Authors:  Kenny Man; Cesar Alcala; Naveen V Mekhileri; Khoon S Lim; Lin-Hua Jiang; Tim B F Woodfield; Xuebin B Yang
Journal:  J Funct Biomater       Date:  2022-04-10

3.  Sodium butyrate has anti-proliferative, pro-differentiating, and immunomodulatory effects in osteosarcoma cells and counteracts the TNFα-induced low-grade inflammation.

Authors:  Silvia Perego; Veronica Sansoni; Giuseppe Banfi; Giovanni Lombardi
Journal:  Int J Immunopathol Pharmacol       Date:  2018 Jan-Dec       Impact factor: 3.219

Review 4.  Adipose tissue stem cells in regenerative medicine.

Authors:  Vanesa Verónica Miana; Elio A Prieto González
Journal:  Ecancermedicalscience       Date:  2018-03-28

5.  Mapping the Inorganic and Proteomic Differences among Different Types of Human Teeth: A Preliminary Compositional Insight.

Authors:  Vaibhav Sharma; Simran Rastogi; Kaushal Kumar Bhati; Alagiri Srinivasan; Ajoy Roychoudhury; Fredrik Nikolajeff; Saroj Kumar
Journal:  Biomolecules       Date:  2020-11-11

6.  Epigenetic reprogramming enhances the therapeutic efficacy of osteoblast-derived extracellular vesicles to promote human bone marrow stem cell osteogenic differentiation.

Authors:  Kenny Man; Mathieu Y Brunet; Maria Fernandez-Rhodes; Soraya Williams; Liam M Heaney; Lee A Gethings; Angelica Federici; Owen G Davies; David Hoey; Sophie C Cox
Journal:  J Extracell Vesicles       Date:  2021-07-07

7.  The Selective Histone Deacetylase Inhibitor MI192 Enhances the Osteogenic Differentiation Efficacy of Human Dental Pulp Stromal Cells.

Authors:  Kenny Man; Liam Lawlor; Lin-Hua Jiang; Xuebin B Yang
Journal:  Int J Mol Sci       Date:  2021-05-14       Impact factor: 5.923

8.  HDAC4 Knockdown Alleviates Denervation-Induced Muscle Atrophy by Inhibiting Myogenin-Dependent Atrogene Activation.

Authors:  Wenjing Ma; Yong Cai; Yuntian Shen; Xin Chen; Lilei Zhang; Yanan Ji; Zehao Chen; Jianwei Zhu; Xiaoming Yang; Hualin Sun
Journal:  Front Cell Neurosci       Date:  2021-06-30       Impact factor: 5.505

9.  The Histone Deacetylase Inhibitor (MS-275) Promotes Differentiation of Human Dental Pulp Stem Cells into Odontoblast-Like Cells Independent of the MAPK Signaling System.

Authors:  Eun-Cheol Lee; Yu-Mi Kim; Han-Moi Lim; Ga-Eun Ki; Young-Kwon Seo
Journal:  Int J Mol Sci       Date:  2020-08-11       Impact factor: 5.923

10.  Butyrate Decreases ICAM-1 Expression in Human Oral Squamous Cell Carcinoma Cells.

Authors:  Gabriel Leonardo Magrin; Francesca Di Summa; Franz-Josef Strauss; Layla Panahipour; Michael Mildner; Cesar Augusto Magalhães Benfatti; Reinhard Gruber
Journal:  Int J Mol Sci       Date:  2020-02-29       Impact factor: 6.208

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