Literature DB >> 28853170

First-generation annotations for the fathead minnow (Pimephales promelas) genome.

Travis W Saari1, Anthony L Schroeder2, Gerald T Ankley1, Daniel L Villeneuve1.   

Abstract

Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxicology. Environ Toxicol Chem 2017;36:3436-3442. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

Entities:  

Keywords:  Annotation; Browser; Fathead; Genome; Pimephales

Mesh:

Year:  2017        PMID: 28853170      PMCID: PMC5733733          DOI: 10.1002/etc.3929

Source DB:  PubMed          Journal:  Environ Toxicol Chem        ISSN: 0730-7268            Impact factor:   3.742


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