Literature DB >> 28852214

Illuminating microbial diversity.

Samuel C Forster1.   

Abstract

Mesh:

Year:  2017        PMID: 28852214     DOI: 10.1038/nrmicro.2017.106

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


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  4 in total

1.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

2.  1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Authors:  Supratim Mukherjee; Rekha Seshadri; Neha J Varghese; Emiley A Eloe-Fadrosh; Jan P Meier-Kolthoff; Markus Göker; R Cameron Coates; Michalis Hadjithomas; Georgios A Pavlopoulos; David Paez-Espino; Yasuo Yoshikuni; Axel Visel; William B Whitman; George M Garrity; Jonathan A Eisen; Philip Hugenholtz; Amrita Pati; Natalia N Ivanova; Tanja Woyke; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Nat Biotechnol       Date:  2017-06-12       Impact factor: 54.908

3.  Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Authors:  H Bjørn Nielsen; Mathieu Almeida; Agnieszka Sierakowska Juncker; Simon Rasmussen; Junhua Li; Shinichi Sunagawa; Damian R Plichta; Laurent Gautier; Anders G Pedersen; Emmanuelle Le Chatelier; Eric Pelletier; Ida Bonde; Trine Nielsen; Chaysavanh Manichanh; Manimozhiyan Arumugam; Jean-Michel Batto; Marcelo B Quintanilha Dos Santos; Nikolaj Blom; Natalia Borruel; Kristoffer S Burgdorf; Fouad Boumezbeur; Francesc Casellas; Joël Doré; Piotr Dworzynski; Francisco Guarner; Torben Hansen; Falk Hildebrand; Rolf S Kaas; Sean Kennedy; Karsten Kristiansen; Jens Roat Kultima; Pierre Léonard; Florence Levenez; Ole Lund; Bouziane Moumen; Denis Le Paslier; Nicolas Pons; Oluf Pedersen; Edi Prifti; Junjie Qin; Jeroen Raes; Søren Sørensen; Julien Tap; Sebastian Tims; David W Ussery; Takuji Yamada; Pierre Renault; Thomas Sicheritz-Ponten; Peer Bork; Jun Wang; Søren Brunak; S Dusko Ehrlich
Journal:  Nat Biotechnol       Date:  2014-07-06       Impact factor: 54.908

4.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Authors:  Dongying Wu; Philip Hugenholtz; Konstantinos Mavromatis; Rüdiger Pukall; Eileen Dalin; Natalia N Ivanova; Victor Kunin; Lynne Goodwin; Martin Wu; Brian J Tindall; Sean D Hooper; Amrita Pati; Athanasios Lykidis; Stefan Spring; Iain J Anderson; Patrik D'haeseleer; Adam Zemla; Mitchell Singer; Alla Lapidus; Matt Nolan; Alex Copeland; Cliff Han; Feng Chen; Jan-Fang Cheng; Susan Lucas; Cheryl Kerfeld; Elke Lang; Sabine Gronow; Patrick Chain; David Bruce; Edward M Rubin; Nikos C Kyrpides; Hans-Peter Klenk; Jonathan A Eisen
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

  4 in total
  2 in total

Review 1.  The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Authors:  Alexandre Angers-Loustau; Mauro Petrillo; Johan Bengtsson-Palme; Thomas Berendonk; Burton Blais; Kok-Gan Chan; Teresa M Coque; Paul Hammer; Stefanie Heß; Dafni M Kagkli; Carsten Krumbiegel; Val F Lanza; Jean-Yves Madec; Thierry Naas; Justin O'Grady; Valentina Paracchini; John W A Rossen; Etienne Ruppé; Jessica Vamathevan; Vittorio Venturi; Guy Van den Eede
Journal:  F1000Res       Date:  2018-04-13

2.  Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation.

Authors:  Sijia Liu; Christina D Moon; Nan Zheng; Sharon Huws; Shengguo Zhao; Jiaqi Wang
Journal:  Microbiome       Date:  2022-05-12       Impact factor: 16.837

  2 in total

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