Literature DB >> 28845532

Mutational analysis using Sanger and next generation sequencing in sporadic spindle cell hemangiomas: A study of 19 cases.

Roel W Ten Broek1, Elise M Bekers1, Wendy W J de Leng2, Eric Strengman2, Bastiaan B J Tops1,3, Heinz Kutzner4, Jan Willem Leeuwis5, Joost M van Gorp6, David H Creytens7, Thomas Mentzel4, Paul J van Diest2, Astrid Eijkelenboom1, Uta Flucke1,2,3.   

Abstract

Spindle cell hemangioma (SCH) is a distinct vascular soft-tissue lesion characterized by cavernous blood vessels and a spindle cell component mainly occurring in the distal extremities of young adults. The majority of cases harbor heterozygous mutations in IDH1/2 sporadically or rarely in association with Maffucci syndrome. However, based on mosaicism and accordingly a low percentage of lesional cells harboring a mutant allele, detection can be challenging. We tested 19 sporadic SCHs by Sanger sequencing, multiplex ligation-dependent probe amplification (MLPA), conventional next generation sequencing (NGS), and NGS using a single molecule molecular inversion probes (smMIP)-based library preparation to compare their diagnostic value. Out of 10 cases tested by Sanger sequencing and 2 analyzed using MLPA, 4 and 1, respectively, revealed a mutation in IDH1 (p.R132C). The 7 remaining negative cases and additional 6 cases were investigated using smMIP/NGS, showing hot spot mutations in IDH1 (p.R132C) (8 cases) and IDH2 (3 cases; twice p.R172S and once p.R172G, respectively). One case was negative. Owing to insufficient DNA quality and insufficient coverage, 2 cases were excluded. In total, in 16 out of 17 cases successfully tested, an IDH1/2 mutation was found. Given that IDH1/2 mutations were absent in 161 other vascular lesions tested by smMIP/NGS, the mutation can be considered as highly specific for SCH.
© 2017 Wiley Periodicals, Inc.

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Year:  2017        PMID: 28845532     DOI: 10.1002/gcc.22501

Source DB:  PubMed          Journal:  Genes Chromosomes Cancer        ISSN: 1045-2257            Impact factor:   4.263


  2 in total

1.  Fusion of the COL4A5 Gene With NR2F2-AS1 in a Hemangioma Carrying a t(X;15)(q22;q26) Chromosomal Translocation.

Authors:  Ioannis Panagopoulos; Ludmila Gorunova; Ingvild Lobmaier; Kristin Andersen; Marius Lund-Iversen; Francesca Micci; Sverre Heim
Journal:  Cancer Genomics Proteomics       Date:  2020 Jul-Aug       Impact factor: 4.069

2.  Comprehensive molecular and clinicopathological analysis of vascular malformations: A study of 319 cases.

Authors:  Roel W Ten Broek; Astrid Eijkelenboom; Carine J M van der Vleuten; Eveline J Kamping; Marleen Kets; Bas H Verhoeven; Katrien Grünberg; Leo J Schultze Kool; Bastiaan B J Tops; Marjolijn J L Ligtenberg; Uta Flucke
Journal:  Genes Chromosomes Cancer       Date:  2019-02-11       Impact factor: 5.006

  2 in total

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