Literature DB >> 28844743

Recent advances in biophysical studies of rhodopsins - Oligomerization, folding, and structure.

Leonid S Brown1, Oliver P Ernst2.   

Abstract

Retinal-binding proteins, mainly known as rhodopsins, function as photosensors and ion transporters in a wide range of organisms. From halobacterial light-driven proton pump, bacteriorhodopsin, to bovine photoreceptor, visual rhodopsin, they have served as prototypical α-helical membrane proteins in a large number of biophysical studies and aided in the development of many cutting-edge techniques of structural biology and biospectroscopy. In the last decade, microbial and animal rhodopsin families have expanded significantly, bringing into play a number of new interesting structures and functions. In this review, we will discuss recent advances in biophysical approaches to retinal-binding proteins, primarily microbial rhodopsins, including those in optical spectroscopy, X-ray crystallography, nuclear magnetic resonance, and electron paramagnetic resonance, as applied to such fundamental biological aspects as protein oligomerization, folding, and structure.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Folding; Ion transport; Membrane protein structure; Oligomerization; Photosensory transduction; Rhodopsins

Mesh:

Substances:

Year:  2017        PMID: 28844743     DOI: 10.1016/j.bbapap.2017.08.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta Proteins Proteom        ISSN: 1570-9639            Impact factor:   3.036


  7 in total

Review 1.  Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering.

Authors:  Akimasa Kaneko; Keiichi Inoue; Keiichi Kojima; Hideki Kandori; Yuki Sudo
Journal:  Biophys Rev       Date:  2017-11-25

2.  Investigation of spectral and kinetic properties of polymer films based on some analogs of bacteriorhodopsin.

Authors:  Anna B Druzhko; Sergey K Pirutin
Journal:  Eur Biophys J       Date:  2019-10-23       Impact factor: 1.733

Review 3.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

4.  Spectroscopic Characterization of Halorhodopsin Reconstituted into Nanodisks Using Native Lipids.

Authors:  Ayumi Yamamoto; Takashi Tsukamoto; Kenshiro Suzuki; Eri Hashimoto; Yoshihiro Kobashigawa; Kousuke Shibasaki; Takeshi Uchida; Fuyuhiko Inagaki; Makoto Demura; Koichiro Ishimori
Journal:  Biophys J       Date:  2020-04-29       Impact factor: 4.033

5.  Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy.

Authors:  Mikihiro Shibata; Keiichi Inoue; Kento Ikeda; Masae Konno; Manish Singh; Chihiro Kataoka; Rei Abe-Yoshizumi; Hideki Kandori; Takayuki Uchihashi
Journal:  Sci Rep       Date:  2018-05-29       Impact factor: 4.379

6.  Structure and mechanisms of sodium-pumping KR2 rhodopsin.

Authors:  Kirill Kovalev; Vitaly Polovinkin; Ivan Gushchin; Alexey Alekseev; Vitaly Shevchenko; Valentin Borshchevskiy; Roman Astashkin; Taras Balandin; Dmitry Bratanov; Svetlana Vaganova; Alexander Popov; Vladimir Chupin; Georg Büldt; Ernst Bamberg; Valentin Gordeliy
Journal:  Sci Adv       Date:  2019-04-10       Impact factor: 14.136

7.  X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin.

Authors:  Takefumi Morizumi; Wei-Lin Ou; Ned Van Eps; Keiichi Inoue; Hideki Kandori; Leonid S Brown; Oliver P Ernst
Journal:  Sci Rep       Date:  2019-08-02       Impact factor: 4.379

  7 in total

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