Literature DB >> 28843811

Super resolution imaging of chromatin in pluripotency, differentiation, and reprogramming.

Maria Aurelia Ricci1, Maria Pia Cosma2, Melike Lakadamyali3.   

Abstract

Chromatin fiber organization is essential for gene function in all cell types. Moreover it helps to determine cell fate in embryonic/adult stem cells and in somatic cells undergoing reprogramming to pluripotency. Until now the diffraction limit of light has limited the inspection of the chromatin fiber organization to a level sufficient to understand how it impacts gene function. The development of advanced microscopy methods, such as single molecule localization microscopy, has largely opened a new field of research providing us with the tools to visualize and quantitatively analyze chromatin fiber organization and thus gene activity at nanoscale resolution in single cells.
Copyright © 2017. Published by Elsevier Ltd.

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Year:  2017        PMID: 28843811     DOI: 10.1016/j.gde.2017.07.010

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  7 in total

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Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

2.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

3.  A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM.

Authors:  Christopher H Bohrer; Xinxing Yang; Shreyasi Thakur; Xiaoli Weng; Brian Tenner; Ryan McQuillen; Brian Ross; Matthew Wooten; Xin Chen; Jin Zhang; Elijah Roberts; Melike Lakadamyali; Jie Xiao
Journal:  Nat Methods       Date:  2021-05-31       Impact factor: 47.990

4.  H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis.

Authors:  Andrey Poleshko; Cheryl L Smith; Son C Nguyen; Priya Sivaramakrishnan; Karen G Wong; John Isaac Murray; Melike Lakadamyali; Eric F Joyce; Rajan Jain; Jonathan A Epstein
Journal:  Elife       Date:  2019-10-01       Impact factor: 8.140

5.  Efficient hemogenic endothelial cell specification by RUNX1 is dependent on baseline chromatin accessibility of RUNX1-regulated TGFβ target genes.

Authors:  Elizabeth D Howell; Amanda D Yzaguirre; Peng Gao; Raphael Lis; Bing He; Melike Lakadamyali; Shahin Rafii; Kai Tan; Nancy A Speck
Journal:  Genes Dev       Date:  2021-10-21       Impact factor: 11.361

6.  Super-Resolution Microscopy in Studying the Structure and Function of the Cell Nucleus.

Authors:  S S Ryabichko; A N Ibragimov; L A Lebedeva; E N Kozlov; Y V Shidlovskii
Journal:  Acta Naturae       Date:  2017 Oct-Dec       Impact factor: 1.845

7.  Three-dimensional spatially resolved geometrical and functional models of human liver tissue reveal new aspects of NAFLD progression.

Authors:  Fabián Segovia-Miranda; Hernán Morales-Navarrete; Michael Kücken; Vincent Moser; Sarah Seifert; Urska Repnik; Fabian Rost; Mario Brosch; Alexander Hendricks; Sebastian Hinz; Christoph Röcken; Dieter Lütjohann; Yannis Kalaidzidis; Clemens Schafmayer; Lutz Brusch; Jochen Hampe; Marino Zerial
Journal:  Nat Med       Date:  2019-12-02       Impact factor: 53.440

  7 in total

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