Literature DB >> 28843669

Visualization of IAV Genomes at the Single-Cell Level.

Dan Wang1, Wenjun Ma2.   

Abstract

Different influenza A viruses (IAVs) infect the same cell in a host, and can subsequently produce new viruses through genome reassortment. By combining padlock probe RNA labeling with a single-cell analysis, a new approach effectively captures IAV genome trafficking and defines a time window for genome reassortment from same-cell coinfections.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  influenza A virus genomes; single cell; visualization

Mesh：

Year:  2017        PMID： 28843669      PMCID： PMC5654494          DOI： 10.1016/j.tim.2017.08.003

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN： 0966-842X            Impact factor:   17.079


  10 in total

1.  Padlock probes: circularizing oligonucleotides for localized DNA detection.

Authors:  M Nilsson; H Malmgren; M Samiotaki; M Kwiatkowski; B P Chowdhary; U Landegren
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

2.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification.

Authors:  P M Lizardi; X Huang; Z Zhu; P Bray-Ward; D C Thomas; D C Ward
Journal:  Nat Genet       Date:  1998-07       Impact factor: 38.330

3.  Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Authors:  Florian Buettner; Kedar N Natarajan; F Paolo Casale; Valentina Proserpio; Antonio Scialdone; Fabian J Theis; Sarah A Teichmann; John C Marioni; Oliver Stegle
Journal:  Nat Biotechnol       Date:  2015-01-19       Impact factor: 54.908

4.  Analysis of IAV Replication and Co-infection Dynamics by a Versatile RNA Viral Genome Labeling Method.

Authors:  Dan Dou; Iván Hernández-Neuta; Hao Wang; Henrik Östbye; Xiaoyan Qian; Swantje Thiele; Patricia Resa-Infante; Nancy Mounogou Kouassi; Vicky Sender; Karina Hentrich; Peter Mellroth; Birgitta Henriques-Normark; Gülsah Gabriel; Mats Nilsson; Robert Daniels
Journal:  Cell Rep       Date:  2017-07-05       Impact factor: 9.423

Review 5.  Single-Cell Genomics for Virology.

Authors:  Angela Ciuffi; Sylvie Rato; Amalio Telenti
Journal:  Viruses       Date:  2016-05-04       Impact factor: 5.048

6.  A Novel Single-Cell FISH-Flow Assay Identifies Effector Memory CD4+ T cells as a Major Niche for HIV-1 Transcription in HIV-Infected Patients.

Authors:  Judith Grau-Expósito; Carla Serra-Peinado; Lucia Miguel; Jordi Navarro; Adrià Curran; Joaquin Burgos; Imma Ocaña; Esteban Ribera; Ariadna Torrella; Bibiana Planas; Rosa Badía; Josep Castellví; Vicenç Falcó; Manuel Crespo; Maria J Buzon
Journal:  mBio       Date:  2017-07-11       Impact factor: 7.867

7.  The transcriptional landscape of αβ T cell differentiation.

Authors:  Michael Mingueneau; Taras Kreslavsky; Daniel Gray; Tracy Heng; Richard Cruse; Jeffrey Ericson; Sean Bendall; Matthew H Spitzer; Garry P Nolan; Koichi Kobayashi; Harald von Boehmer; Diane Mathis; Christophe Benoist; Adam J Best; Jamie Knell; Ananda Goldrath; Vladimir Joic; Daphne Koller; Tal Shay; Aviv Regev; Nadia Cohen; Patrick Brennan; Michael Brenner; Francis Kim; Tata Nageswara Rao; Amy Wagers; Tracy Heng; Jeffrey Ericson; Katherine Rothamel; Adriana Ortiz-Lopez; Diane Mathis; Christophe Benoist; Natalie A Bezman; Joseph C Sun; Gundula Min-Oo; Charlie C Kim; Lewis L Lanier; Jennifer Miller; Brian Brown; Miriam Merad; Emmanuel L Gautier; Claudia Jakubzick; Gwendalyn J Randolph; Paul Monach; David A Blair; Michael L Dustin; Susan A Shinton; Richard R Hardy; David Laidlaw; Jim Collins; Roi Gazit; Derrick J Rossi; Nidhi Malhotra; Katelyn Sylvia; Joonsoo Kang; Taras Kreslavsky; Anne Fletcher; Kutlu Elpek; Angelique Bellemare-Pelletier; Deepali Malhotra; Shannon Turley
Journal:  Nat Immunol       Date:  2013-05-05       Impact factor: 25.606

8.  Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule.

Authors:  Lina Josefsson; Sarah Palmer; Nuno R Faria; Philippe Lemey; Joseph Casazza; David Ambrozak; Mary Kearney; Wei Shao; Shyamasundaran Kottilil; Michael Sneller; John Mellors; John M Coffin; Frank Maldarelli
Journal:  PLoS Pathog       Date:  2013-06-20       Impact factor: 6.823

9.  Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection.

Authors:  Frank S Heldt; Sascha Y Kupke; Sebastian Dorl; Udo Reichl; Timo Frensing
Journal:  Nat Commun       Date:  2015-11-20       Impact factor: 14.919

10.  Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses.

Authors:  Elke Allers; Cristina Moraru; Melissa B Duhaime; Erica Beneze; Natalie Solonenko; Jimena Barrero-Canosa; Rudolf Amann; Matthew B Sullivan
Journal:  Environ Microbiol       Date:  2013-03-14       Impact factor: 5.491
  10 in total
  1 in total

Review 1.  Immune responses in influenza A virus and human coronavirus infections: an ongoing battle between the virus and host.

Authors:  Jian Zheng; Stanley Perlman
Journal:  Curr Opin Virol       Date:  2017-11-21       Impact factor: 7.090
  1 in total

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