| Literature DB >> 28841842 |
Frank E Anderson1, Bronwyn W Williams2,3, Kevin M Horn2, Christer Erséus4, Kenneth M Halanych5, Scott R Santos5, Samuel W James6.
Abstract
Entities:
Year: 2017 PMID: 28841842 PMCID: PMC5571655 DOI: 10.1186/s12862-017-1042-8
Source DB: PubMed Journal: BMC Evol Biol ISSN: 1471-2148 Impact factor: 3.260
Collection locality, museum location of voucher specimen, museum catalog number, SRA project number, number of Illumina reads, number of Trinity contigs and number of HaMSTr ortholog groups represented for each of the thirty-seven transcriptomes generated in this study
| Taxon | Locality | Museum | # Contigs | # HaMStR Orthologs |
|---|---|---|---|---|
| Acanthodrilidae sp. | Argentina, Tierra del Fuego, Ushuaia (coll. E. Lapied) | NCSM 27264 | 181,228 | 1140 |
|
| Gabon, edge of Lac Vembo, Gamba complex, (coll. S James 18 May 2008) | NCSM 27265 | 110,015 | 558 |
|
| France, Jargeau, Loiret Department, (coll. M. Koken) | MNHN HEL593 | 182,509 | 1173 |
|
| Hungary (coll. C. Csuzdi) | NCSM 27266 | 119,084 | 934 |
|
| Sweden, Södermanland, Vingåker, Valltrand, indoor compost, 59.0864 N, 16.0544 E (coll. E. Boräng, 1 Jan 2012) | SMNH 161291 | 179,981 | 1180 |
|
| Brazil, Amazonas, near Manaus, Reserva Campina (coll. S. James, S. Coral, 2 Feb 2012) | NCSM 27267 | 116,065 | 1140 |
|
| France, Guadeloupe, Basse Terre (colls. S. James, F. Gamiette Feb 2013) | NCSM 27268 | 106,438 | 1152 |
|
| France, Guadeloupe, Chutes Carbet, Basse Terre (colls. S. James, F. Gamiette Feb 2013) | NCSM 00000 | 98,665 | 999 |
|
| USA, Tonganoxie, Kansas (coll. S. James? May 2013) | NCSM 27269 | 159,219 | 1081 |
|
| Unknown | --- | 137,631 | 1217 |
|
| Sweden, Södermanland, Vingåker, Valltrand, indoor compost, 59.0864 N, 16.0544 E (coll. E. Boräng, 1 Jan 2012) | SMNH 161292 | 168,836 | 1191 |
|
| Brazil, Sao Paulo, bait shop (coll. S. James, 7 Nov 2010) | NCSM 27270 | 85,990 | 1008 |
|
| Brazil, Assistencia, São Paulo, Fazenda Sta Rosa (coll. S. James, 9 Nov 2012) | NCSM 27271 | 95,465 | 705 |
|
| France, Aveyron, L’Hospitalet du Larzac (coll. S James, 1 Mar 2011) | NCSM 27272 | 104,334 | 961 |
|
| South Africa, Western Cape, Stellenbosch (colls S. James, D. Plisko, 27 Aug 2011) | NCSM 27273 | 84,303 | 932 |
|
| Brazil, Amazonas, near Manaus, Reserva Ducke (colls. S. James, S. Coral 1 Feb 2012) | NCSM 27274 | 122,993 | 1053 |
|
| Brazil, Parana, Campina Grande do Sul, Caratuva peak trail (coll. S. James, M. Bartz, 17 Oct 2010) | NCSM 27275 | 58,411 | 722 |
|
| France, Aveyron, L’Hospitalet du Larzac (coll. S James, 1 Mar 2011) | NCSM 27276 | 103,338 | 1098 |
|
| SRA PRJNA196484a,Spain, El Molar, 40°44′22.9″N, 3°33′53.1″W | --- | 459,282 | 1234 |
|
| Brazil, Parana, Graciosa Road (coll. S. James, 4 Nov 2010) | NCSM 27277 | 104,982 | 1010 |
|
| USA, Sideling Hill Wildlife Mgmt. Area, Washington County, Maryland. (colls. S. James, M. Callaham, May 2013) | NCSM 27278 | 83,743 | 1151 |
|
| Madagascar, Antsirabe, 19°46′38.60″S 47°06′41.69″E | NCSM 00000 | 108,836 | 1073 |
|
| USA, Louisiana, Washington Parish (coll S. James, M. Callaham, M. Damoff, C. Erseus, 17 Jan 2011) | NCSM 00000 | 57,341 | 1049 |
|
| New Zealand, Kelly’s Creek (coll. T. Buckley) | NCSM 27279 | 80,910 | 861 |
| Microchaetidae sp. | South Africa, Western Cape, Tokai Swamp (colls. S. James and D. Plisko, 29 Aug 2011) | NCSM 27280 | 194,638 | 1053 |
|
| South Africa, Northern Cape, Niewwoudtville (colls. S. James, D. Plisko 5 Sep 2011) | NCSM 27281 | 125,494 | 1093 |
|
| South Africa, Western Cape, Table Mountain (coll. James, Meassey, Plisko, 26 Aug 2011) | NCSM 27282 | 102,971 | 1074 |
| Place Kabary 2 sp. | Madagascar, Place Kabary, Antsiranana, 12°16′58.27″S 49°17′25.94″E | NCSM 00000 | 146,018 | 1157 |
|
| USA, Cedar Point, Alabama (colls. S. James, C. Erséus 17 January 2011) | NCSM 00000 | 90,268 | 1189 |
|
| Brazil, Amazonas, Reserve Ducke (colls. S. James, S. Coral, 3 Feb 2012) | NCSM 00000 | 87,158 | 1102 |
|
| France, Midi-Pyrénées, Ariège, Malegoude (coll. S. James, 2 Mar 2011) | NCSM 27283 | 113,157 | 1041 |
|
| USA, Iowa, Des Moines River, at Douds (coll. S. James 12 May 2012) | NCSM 27284 | 123,905 | 1199 |
|
| Brazil, Rio Grande do Sul, Santo Cristo (coll. G. Steffen 09 Sep 2009) | NCSM 27285 | 55,709 | 890 |
|
| France, Aveyron, Montpellier (colls. S. James, M. Bouche, 1 Mar 2011) | NCSM 27286 | 93,260 | 779 |
| Outgroups | ||||
|
| France, Midi-Pyrénées, Ariège, Cazavet, L’Estelas Cave, in water, 43.000 N, 1.010 E (coll. M.C. des Chatelliers, P. Martin & N. Giani, 24 May 2011) (topotype) | SMNH 161293 | 118,020 | 1067 |
|
| Western Australia, 25.5 km S of Busselton, Rapids Conservation Park, Margaret River (coll. C. Erséus, 16 Sep 2012) | WAM V9004 | 100,864 | 1129 |
|
| Sweden, Västergötland, Göteborg, seeping groundwater at Göteborg Botanical Garden (Vitsippsdalen), 57.6813 N, 11.9562 E (C. Erséus & A. Achurra, 29 Mar 2011) | SMNH 161294 in EtOH CE11200 | 53,878 | 855 |
|
| Brazil, Amazonas, Reserva Ducke (colls. S. James, S. Coral, 3 Feb 2012) (topotype) | NCSM 000000 in EtOH CE14372 | 93,548 | 1053 |
|
| Sweden, Västergötland, Göteborg, Guldheden, spring S of Dr. Fries Torg, 57.6827 N, 11.9707 E (coll. M. Svensson, 8 Nov 2011) | SMNH 161295 slide CE13679 | 109,949 | 985 |
|
| Sweden, Blekinge, Ronneby, Väby, Bräkneån River, sand in rapids, 56.1792 N, 15.1052 E (C. Erséus, B. Williams & S. Martinsson, 31 May 2013) (topotype) | SMNH 161296 slide CE18375 | 131,574 | 1140 |
anumbers of contigs and orthologs pooled across transcriptomes from three tissue types; see [85] for details. MNHN = National Museum of Natural History (Paris, France); NCSM = North Carolina Museum of Natural Sciences; SMNH = Swedish Museum of Natural History; WAM = Western Australian Museum; some specimens include preservation type and co-author Erséus’s specimen ID numbers (CE#####)