Literature DB >> 28840208

The nature of selenium hydrogen bonding: gas phase spectroscopy and quantum chemistry calculations.

Kamal K Mishra1, Santosh K Singh, Paulami Ghosh, Debashree Ghosh, Aloke Das.   

Abstract

Subsequent to the recent re-definition of hydrogen bonding by the IUPAC committee, there has been a growing search for finding the presence of this ever interesting non-covalent interaction between a hydrogen atom in an X-H group and any other atom in the periodic table. In recent gas phase experiments, it has been observed that hydrogen bonding interactions involving S and Se are of similar strength to those with an O atom. However, there is no clear explanation for the unusual strength of this interaction in the case of hydrogen bond acceptors which are not conventional electronegative atoms. In this work, we have explored the nature of Se hydrogen bonding by studying indoledimethyl selenide (indmse) and phenoldimethyl selenide (phdmse) complexes using gas phase IR spectroscopy and quantum chemistry calculations. We have found through various energy decomposition analysis (EDA) methods and natural bond orbital (NBO) calculations that, along with electrostatics and polarization, charge transfer interactions are important to understand Se/S hydrogen bonding and there is a delicate balance between the various interactions that plays the crucial role rather than a single component of the interaction energy. An in-depth understanding of this type of non-covalent interaction has immense significance in biology as amino acids containing S and Se are widely present in proteins and hence hydrogen bonding interactions involving S and Se atoms contribute to the folding of proteins.

Entities:  

Year:  2017        PMID: 28840208     DOI: 10.1039/c7cp05265k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  3 in total

1.  Selenium in Proteins: Conformational Changes Induced by Se Substitution on Methionine, as Studied in Isolated Model Peptides by Optical Spectroscopy and Quantum Chemistry.

Authors:  Gildas Goldsztejn; Venkateswara Rao Mundlapati; Valérie Brenner; Eric Gloaguen; Michel Mons
Journal:  Molecules       Date:  2022-05-15       Impact factor: 4.927

2.  Structural Insights into the Interaction of Clinically Relevant Phosphorothioate mRNA Cap Analogs with Translation Initiation Factor 4E Reveal Stabilization via Electrostatic Thio-Effect.

Authors:  Marcin Warminski; Joanna Kowalska; Elzbieta Nowak; Dorota Kubacka; Ryan Tibble; Renata Kasprzyk; Pawel J Sikorski; John D Gross; Marcin Nowotny; Jacek Jemielity
Journal:  ACS Chem Biol       Date:  2021-01-13       Impact factor: 5.100

3.  Importance of water and intramolecular interaction governs substantial blue shift of Csp2 -H stretching frequency in complexes between chalcogenoaldehydes and water.

Authors:  Nguyen Thi Thanh Cuc; Nguyen Truong An; Vu Thi Ngan; Asit K Chandra; Nguyen Tien Trung
Journal:  RSC Adv       Date:  2022-01-12       Impact factor: 3.361

  3 in total

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