Literature DB >> 28839924

Evolution viewed from physics, physiology and medicine.

Denis Noble1.   

Abstract

Stochasticity is harnessed by organisms to generate functionality. Randomness does not, therefore, necessarily imply lack of function or 'blind chance' at higher levels. In this respect, biology must resemble physics in generating order from disorder. This fact is contrary to Schrödinger's idea of biology generating phenotypic order from molecular-level order, which inspired the central dogma of molecular biology. The order originates at higher levels, which constrain the components at lower levels. We now know that this includes the genome, which is controlled by patterns of transcription factors and various epigenetic and reorganization mechanisms. These processes can occur in response to environmental stress, so that the genome becomes 'a highly sensitive organ of the cell' (McClintock). Organisms have evolved to be able to cope with many variations at the molecular level. Organisms also make use of physical processes in evolution and development when it is possible to arrive at functional development without the necessity to store all information in DNA sequences. This view of development and evolution differs radically from that of neo-Darwinism with its emphasis on blind chance as the origin of variation. Blind chance is necessary, but the origin of functional variation is not at the molecular level. These observations derive from and reinforce the principle of biological relativity, which holds that there is no privileged level of causation. They also have important implications for medical science.

Entities:  

Keywords:  Schrödinger's error; biological relativity; evolution and physiology; modern synthesis; neo-Darwinism; stochasticity

Year:  2017        PMID: 28839924      PMCID: PMC5566812          DOI: 10.1098/rsfs.2016.0159

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  40 in total

1.  Erwin Schrödinger and the origins of molecular biology.

Authors:  K R Dronamraju
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

2.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  Reciprocal role of the inward currents ib, Na and i(f) in controlling and stabilizing pacemaker frequency of rabbit sino-atrial node cells.

Authors:  D Noble; J C Denyer; H F Brown; D DiFrancesco
Journal:  Proc Biol Sci       Date:  1992-12-22       Impact factor: 5.349

4.  A NEW ADRENERGIC BETARECEPTOR ANTAGONIST.

Authors:  J W BLACK; A F CROWTHER; R G SHANKS; L H SMITH; A C DORNHORST
Journal:  Lancet       Date:  1964-05-16       Impact factor: 79.321

5.  On protein synthesis.

Authors:  F H CRICK
Journal:  Symp Soc Exp Biol       Date:  1958

6.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

Review 7.  Targeting of somatic hypermutation.

Authors:  Valerie H Odegard; David G Schatz
Journal:  Nat Rev Immunol       Date:  2006-08       Impact factor: 53.106

Review 8.  Heart rate lowering by specific and selective I(f) current inhibition with ivabradine: a new therapeutic perspective in cardiovascular disease.

Authors:  Dario DiFrancesco; John A Camm
Journal:  Drugs       Date:  2004       Impact factor: 9.546

Review 9.  Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation.

Authors:  Richard Moxon; Chris Bayliss; Derek Hood
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

10.  P element homing to the Drosophila bithorax complex.

Authors:  W Bender; A Hudson
Journal:  Development       Date:  2000-09       Impact factor: 6.868

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  8 in total

1.  Systems biology of eukaryotic superorganisms and the holobiont concept.

Authors:  Ulrich Kutschera
Journal:  Theory Biosci       Date:  2018-06-14       Impact factor: 1.919

Review 2.  Was the Watchmaker Blind? Or Was She One-Eyed?

Authors:  Raymond Noble; Denis Noble
Journal:  Biology (Basel)       Date:  2017-12-20

3.  The metaphysics of evolution.

Authors:  John Dupré
Journal:  Interface Focus       Date:  2017-08-18       Impact factor: 3.906

4.  The Dynamical Emergence of Biology From Physics: Branching Causation via Biomolecules.

Authors:  George F R Ellis; Jonathan Kopel
Journal:  Front Physiol       Date:  2019-01-25       Impact factor: 4.566

5.  Autopoiesis, Thermodynamics, and the Natural Drift of Living Beings: Another Way to the New Evolutionary Synthesis.

Authors:  Mario Villalobos; Ramiro Frick; Sergio Vicencio-Jimenez
Journal:  Entropy (Basel)       Date:  2022-06-30       Impact factor: 2.738

Review 6.  Modern physiology vindicates Darwin's dream.

Authors:  Denis Noble
Journal:  Exp Physiol       Date:  2022-08-14       Impact factor: 2.858

Review 7.  Non-Random Genome Editing and Natural Cellular Engineering in Cognition-Based Evolution.

Authors:  William B Miller; Francisco J Enguita; Ana Lúcia Leitão
Journal:  Cells       Date:  2021-05-07       Impact factor: 6.600

Review 8.  Order Through Disorder: The Characteristic Variability of Systems.

Authors:  Yaron Ilan
Journal:  Front Cell Dev Biol       Date:  2020-03-20
  8 in total

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