Literature DB >> 28836416

Automated classification of cell morphology by coherence-controlled holographic microscopy.

Lenka Strbkova1, Daniel Zicha1, Pavel Vesely1, Radim Chmelik2.   

Abstract

In the last few years, classification of cells by machine learning has become frequently used in biology. However, most of the approaches are based on morphometric (MO) features, which are not quantitative in terms of cell mass. This may result in poor classification accuracy. Here, we study the potential contribution of coherence-controlled holographic microscopy enabling quantitative phase imaging for the classification of cell morphologies. We compare our approach with the commonly used method based on MO features. We tested both classification approaches in an experiment with nutritionally deprived cancer tissue cells, while employing several supervised machine learning algorithms. Most of the classifiers provided higher performance when quantitative phase features were employed. Based on the results, it can be concluded that the quantitative phase features played an important role in improving the performance of the classification. The methodology could be valuable help in refining the monitoring of live cells in an automated fashion. We believe that coherence-controlled holographic microscopy, as a tool for quantitative phase imaging, offers all preconditions for the accurate automated analysis of live cell behavior while enabling noninvasive label-free imaging with sufficient contrast and high-spatiotemporal phase sensitivity. (2017) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

Entities:  

Keywords:  cell morphology; classification; coherence-controlled holographic microscopy; digital holographic microscopy; quantitative phase imaging; supervised machine learning

Mesh:

Year:  2017        PMID: 28836416     DOI: 10.1117/1.JBO.22.8.086008

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  8 in total

1.  Machine Learning with Optical Phase Signatures for Phenotypic Profiling of Cell Lines.

Authors:  Van K Lam; Thanh Nguyen; Thuc Phan; Byung-Min Chung; George Nehmetallah; Christopher B Raub
Journal:  Cytometry A       Date:  2019-04-22       Impact factor: 4.355

2.  Cellular analysis using label-free parallel array microscopy with Fourier ptychography.

Authors:  Devin L Wakefield; Richard Graham; Kevin Wong; Songli Wang; Christopher Hale; Chung-Chieh Yu
Journal:  Biomed Opt Express       Date:  2022-02-07       Impact factor: 3.732

3.  Geometric-Phase Microscopy for Quantitative Phase Imaging of Isotropic, Birefringent and Space-Variant Polarization Samples.

Authors:  Petr Bouchal; Lenka Štrbková; Zbyněk Dostál; Radim Chmelík; Zdeněk Bouchal
Journal:  Sci Rep       Date:  2019-03-05       Impact factor: 4.379

4.  Whole-Cell Multiparameter Assay for Ricin and Abrin Activity-Based Digital Holographic Microscopy.

Authors:  Efi Makdasi; Orly Laskar; Elad Milrot; Ofir Schuster; Shlomo Shmaya; Shmuel Yitzhaki
Journal:  Toxins (Basel)       Date:  2019-03-22       Impact factor: 4.546

5.  Quantitative Phase Imaging of Spreading Fibroblasts Identifies the Role of Focal Adhesion Kinase in the Stabilization of the Cell Rear.

Authors:  Olga Ramaniuk; Zuzana Klímová; Tomáš Groušl; Tomáš Vomastek
Journal:  Biomolecules       Date:  2020-07-22

6.  Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images.

Authors:  Andrey V Belashov; Anna A Zhikhoreva; Tatiana N Belyaeva; Anna V Salova; Elena S Kornilova; Irina V Semenova; Oleg S Vasyutinskii
Journal:  Cells       Date:  2021-09-29       Impact factor: 6.600

7.  Morphology, Motility, and Cytoskeletal Architecture of Breast Cancer Cells Depend on Keratin 19 and Substrate.

Authors:  Van K Lam; Pooja Sharma; Thanh Nguyen; Georges Nehmetallah; Christopher B Raub; Byung Min Chung
Journal:  Cytometry A       Date:  2020-04-14       Impact factor: 4.355

8.  Quantitative phase imaging unravels new insight into dynamics of mesenchymal and amoeboid cancer cell invasion.

Authors:  Ondřej Tolde; Aneta Gandalovičová; Aneta Křížová; Pavel Veselý; Radim Chmelík; Daniel Rosel; Jan Brábek
Journal:  Sci Rep       Date:  2018-08-13       Impact factor: 4.379

  8 in total

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