Literature DB >> 28835995

Spirosoma gilvum sp. nov., Isolated from Beach Soil.

Jae-Jin Lee1, Nabil Elderiny1, Seung-Yeol Lee1, Dae Sung Lee2, Myung Kyum Kim3, Leonid N Ten1, Hee-Young Jung4,5.   

Abstract

A Gram-reaction-negative, nonmotile, rod-shaped, aerobic bacterial strain, designated 15J10-9T5T, was isolated from beach soil on Jeju Island, South Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that the isolate belonged to the family Cytophagaceae in the phylum Bacteroidetes, and was most closely related to Spirosoma aerolatum PR1012kT (96.1%) and Spirosoma panaciterrae DSM 21099T (95.7%). The detection of menaquinone MK-7 as the predominant respiratory quinone, a fatty acid profile with summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and iso-C15:0 as the major components, and a polar lipid profile with phosphatidylethanolamine as the major component also supported the affiliation of strain 15J10-9T5T in the genus Spirosoma. The G+C content of the genomic DNA was 47.7 mol %. The isolate could be clearly differentiated from its closest neighbors based on its phenotypic, phylogenetic, chemotaxonomic, and genotypic features. Therefore, strain 15J10-9T5T represents a novel species of the genus Spirosoma, for which the name Spirosoma gilvum sp. nov. is proposed. The type strain is 15J10-9T5T (=KCTC 52033T = JCM 31997T).

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Year:  2017        PMID: 28835995     DOI: 10.1007/s00284-017-1336-5

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  24 in total

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2.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

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Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

3.  List of new names and new combinations previously effectively, but not validly, published.

Authors:  Aharon Oren; George M Garrity
Journal:  Int J Syst Evol Microbiol       Date:  2016-11       Impact factor: 2.747

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Spirosoma soli sp. nov., isolated from biological soil crusts.

Authors:  Shan Shan Yang; Kai Tang; Xiaojie Zhang; Jianxia Wang; Xiaobing Wang; Fuying Feng; Heng Li
Journal:  Int J Syst Evol Microbiol       Date:  2016-10-09       Impact factor: 2.747

7.  Spirosoma swuense sp. nov., isolated from wet soil.

Authors:  Eun Sun Joo; Eun Bit Kim; Seon Hwa Jeon; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  Int J Syst Evol Microbiol       Date:  2017-04-03       Impact factor: 2.747

8.  Spirosoma knui sp. nov., a radiation-resistant bacterium isolated from the Han River.

Authors:  Jae-Jin Lee; Yeon-Hee Lee; Su-Jin Park; Seung-Yeol Lee; Byung-Oh Kim; Leonid N Ten; Myung Kyum Kim; Hee-Young Jung
Journal:  Int J Syst Evol Microbiol       Date:  2017-05-30       Impact factor: 2.747

9.  Spirosoma fluviale sp. nov., isolated from river water.

Authors:  Kouta Hatayama; Teruaki Kuno
Journal:  Int J Syst Evol Microbiol       Date:  2015-07-09       Impact factor: 2.747

10.  Spirosoma aerolatum sp. nov., isolated from a motor car air conditioning system.

Authors:  Dong-Uk Kim; Hyosun Lee; Song-Gun Kim; Jae-Hyung Ahn; So Yoon Park; Jong-Ok Ka
Journal:  Int J Syst Evol Microbiol       Date:  2015-11       Impact factor: 2.747

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