Literature DB >> 28834185

Automated analysis of individual sperm cells using stain-free interferometric phase microscopy and machine learning.

Simcha K Mirsky1, Itay Barnea1, Mattan Levi2, Hayit Greenspan1, Natan T Shaked1.   

Abstract

Currently, the delicate process of selecting sperm cells to be used for in vitro fertilization (IVF) is still based on the subjective, qualitative analysis of experienced clinicians using non-quantitative optical microscopy techniques. In this work, a method was developed for the automated analysis of sperm cells based on the quantitative phase maps acquired through use of interferometric phase microscopy (IPM). Over 1,400 human sperm cells from 8 donors were imaged using IPM, and an algorithm was designed to digitally isolate sperm cell heads from the quantitative phase maps while taking into consideration both the cell 3D morphology and contents, as well as acquire features describing sperm head morphology. A subset of these features was used to train a support vector machine (SVM) classifier to automatically classify sperm of good and bad morphology. The SVM achieves an area under the receiver operating characteristic curve of 88.59% and an area under the precision-recall curve of 88.67%, as well as precisions of 90% or higher. We believe that our automatic analysis can become the basis for objective and automatic sperm cell selection in IVF.
© 2017 International Society for Advancement of Cytometry. © 2017 International Society for Advancement of Cytometry.

Entities:  

Keywords:  holography; in vitro fertilization; interference microscopy; machine learning; spermatozoa; support vector machine

Mesh:

Year:  2017        PMID: 28834185     DOI: 10.1002/cyto.a.23189

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  13 in total

1.  PhUn-Net: ready-to-use neural network for unwrapping quantitative phase images of biological cells.

Authors:  Gili Dardikman-Yoffe; Darina Roitshtain; Simcha K Mirsky; Nir A Turko; Mor Habaza; Natan T Shaked
Journal:  Biomed Opt Express       Date:  2020-01-24       Impact factor: 3.732

2.  Machine Learning with Optical Phase Signatures for Phenotypic Profiling of Cell Lines.

Authors:  Van K Lam; Thanh Nguyen; Thuc Phan; Byung-Min Chung; George Nehmetallah; Christopher B Raub
Journal:  Cytometry A       Date:  2019-04-22       Impact factor: 4.355

Review 3.  Machine learning-enabled multiplexed microfluidic sensors.

Authors:  Sajjad Rahmani Dabbagh; Fazle Rabbi; Zafer Doğan; Ali Kemal Yetisen; Savas Tasoglu
Journal:  Biomicrofluidics       Date:  2020-12-11       Impact factor: 2.800

4.  Reconstruction of bovine spermatozoa substances distribution and morphological differences between Holstein and Korean native cattle using three-dimensional refractive index tomography.

Authors:  Hao Jiang; Jeong-Woo Kwon; Sumin Lee; Yu-Jin Jo; Suk Namgoong; Xue-Rui Yao; Bao Yuan; Jia-Bao Zhang; Yong-Keun Park; Nam-Hyung Kim
Journal:  Sci Rep       Date:  2019-06-19       Impact factor: 4.379

5.  Deep learning-based selection of human sperm with high DNA integrity.

Authors:  Christopher McCallum; Jason Riordon; Yihe Wang; Tian Kong; Jae Bem You; Scott Sanner; Alexander Lagunov; Thomas G Hannam; Keith Jarvi; David Sinton
Journal:  Commun Biol       Date:  2019-07-03

6.  Epi-illumination gradient light interference microscopy for imaging opaque structures.

Authors:  Mikhail E Kandel; Chenfei Hu; Ghazal Naseri Kouzehgarani; Eunjung Min; Kathryn Michele Sullivan; Hyunjoon Kong; Jennifer M Li; Drew N Robson; Martha U Gillette; Catherine Best-Popescu; Gabriel Popescu
Journal:  Nat Commun       Date:  2019-10-16       Impact factor: 14.919

Review 7.  Artificial intelligence in reproductive medicine.

Authors:  Renjie Wang; Wei Pan; Lei Jin; Yuehan Li; Yudi Geng; Chun Gao; Gang Chen; Hui Wang; Ding Ma; Shujie Liao
Journal:  Reproduction       Date:  2019-10       Impact factor: 3.906

8.  High-resolution 4-D acquisition of freely swimming human sperm cells without staining.

Authors:  Gili Dardikman-Yoffe; Simcha K Mirsky; Itay Barnea; Natan T Shaked
Journal:  Sci Adv       Date:  2020-04-10       Impact factor: 14.136

Review 9.  Combining Three-Dimensional Quantitative Phase Imaging and Fluorescence Microscopy for the Study of Cell Pathophysiology.

Authors:  Young Seo Kim; SangYun Lee; JaeHwang Jung; Seungwoo Shin; He-Gwon Choi; Guang-Ho Cha; Weisun Park; Sumin Lee; YongKeun Park
Journal:  Yale J Biol Med       Date:  2018-09-21

Review 10.  The Synergy between Organ-on-a-Chip and Artificial Intelligence for the Study of NAFLD: From Basic Science to Clinical Research.

Authors:  Francesco De Chiara; Ainhoa Ferret-Miñana; Javier Ramón-Azcón
Journal:  Biomedicines       Date:  2021-03-02
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