| Literature DB >> 28828208 |
Zhonghe Zhou1, Jinghua Zhang1, Xiaoqiu Li1, Cheng Xia1, Yaling Han2, Huisheng Chen1.
Abstract
INTRODUCTION: We aimed to explore potential cytokines involved in the malignant middle cerebral artery infarction (MMI) and elucidate their underlying regulatory mechanisms.Entities:
Keywords: Malignant middle cerebral artery infarction; cytokines; functional enrichment analysis; microarray; protein–protein interaction
Mesh:
Substances:
Year: 2017 PMID: 28828208 PMCID: PMC5561308 DOI: 10.1002/brb3.746
Source DB: PubMed Journal: Brain Behav Impact factor: 2.708
The risk factors of the participants
| Risk factors | Patients with MMI ( | Patients with NACI ( |
|---|---|---|
| Diabetes | 3 | 2 |
| Coronary heart disease | 4 | 3 |
| Hypertension | 5 | 6 |
| Artery atherosclerosis | 6 | 6 |
| Stroke | 4 | 2 |
| Smoking | 4 | 4 |
| Drinking | 4 | 4 |
The top 10 Gene Ontology terms enriched by differentially expressed cytokines
| Category | Term | Count |
|
|---|---|---|---|
| GO:0030212 | Hyaluronan metabolic process | 3 | 3.90E‐05 |
| GO:1900125 | Regulation of hyaluronan biosynthetic process | 2 | 7.96E‐05 |
| GO:0031093 | Platelet alpha granule lumen | 3 | 9.48E‐05 |
| GO:0031091 | Platelet alpha granule | 3 | 1.95E‐04 |
| GO:0034774 | Secretory granule lumen | 3 | 2.04E‐04 |
| GO:0030213 | Hyaluronan biosynthetic process | 2 | 2.57E‐04 |
| GO:0030214 | Hyaluronan catabolic process | 2 | 3.38E‐04 |
| GO:0031983 | Vesicle lumen | 3 | 3.74E‐04 |
| GO:0060205 | Cytoplasmic membrane‐bounded vesicle lumen | 3 | 3.74E‐04 |
| GO:0002576 | Platelet degranulation | 3 | 4.93E‐04 |
The top 10 enriched pathways by differentially expressed cytokines via different databases
| Category | Term | Count |
|
|---|---|---|---|
| KEGG pathways | |||
| hsa04060 | Cytokine–cytokine receptor interaction | 4 | .0100043 |
| hsa05144 | Malaria | 2 | .0110871 |
| hsa05214 | Glioma | 2 | .0186208 |
| hsa05212 | Pancreatic cancer | 2 | .0191468 |
| hsa05218 | Melanoma | 2 | .0218693 |
| hsa04540 | Gap junction | 2 | .0328786 |
| hsa05215 | Prostate cancer | 2 | .0328786 |
| hsa05323 | Rheumatoid arthritis | 2 | .0342118 |
| hsa05142 | Chagas disease (American trypanosomiasis) | 2 | .0433727 |
| hsa04010 | MAPK signaling pathway | 3 | .0477863 |
| Reactome | |||
| REACT_118779 | Extracellular matrix organization | 7 | 2.56E‐07 |
| REACT_163874 | Non‐integrin membrane‐ECM interactions | 7 | 3.77E‐07 |
| REACT_163906 | ECM proteoglycans | 9 | 1.77E‐05 |
| REACT_318 | Platelet degranulation | 6 | 4.38E‐04 |
| REACT_6323 | Host Interactions with Influenza Factors | 4 | 4.06E‐03 |
| REACT_1280 | Response to elevated platelet cytosolic Ca2+ | 11 | 2.37E‐06 |
| REACT_120996 | Hyaluronan uptake and degradation | 11 | 4.70E‐05 |
| REACT_120726 | TGF‐beta receptor signaling in EMT (epithelial to mesenchymal transition) | 6 | 7.15E‐04 |
| REACT_121083 | Hyaluronan metabolism | 4 | 3.05E‐03 |
| REACT_115852 | Signaling by constitutively active EGFR | 6 | 4.77E‐03 |
| PID | |||
| il27pathway | IL27‐mediated signaling events | 2 | .0051456 |
| ceramide_pathway | Ceramide signaling pathway | 2 | .0134937 |
| pdgf_pathway | PDGF receptor signaling network | 1 | .0267852 |
| telomerasepathway | Regulation of Telomerase | 2 | .0289511 |
| ap1_pathway | AP‐1 transcription factor network | 2 | .0313181 |
| et_egfrpathway | EGFR‐dependent Endothelin signaling events | 1 | .0380509 |
| erbb_network_pathway | ErbB receptor signaling network | 1 | .0602047 |
| syndecan_1_pathway | Syndecan‐1‐mediated signaling events | 1 | .0674790 |
| rxr_vdr_pathway | RXR and RAR heterodimerization with other nuclear receptor | 1 | .0995446 |
| alk1pathway | ALK1 signaling events | 1 | .0995446 |
Figure 1Cytokine–cytokine receptor interaction pathway. The red nodes are the screened differentially expressed cytokines in our study
Figure 2Protein –protein interaction (PPI) networks. (a) PPI network was constructed by the screened differentially expressed cytokines in our study; (b) PPI network was constructed by differentially expressed cytokines and other interacted proteins