Literature DB >> 28827612

New approaches to high-resolution mapping of marine vertical structures.

Katleen Robert1, Veerle A I Huvenne2, Aggeliki Georgiopoulou3,4, Daniel O B Jones2, Leigh Marsh2,5, Gareth D O Carter6, Leo Chaumillon2,7.   

Abstract

Vertical walls in marine environments can harbour high biodiversity and provide natural protection from bottom-trawling activities. However, traditional mapping techniques are usually restricted to down-looking approaches which cannot adequately replicate their 3D structure. We combined sideways-looking multibeam echosounder (MBES) data from an AUV, forward-looking MBES data from ROVs and ROV-acquired videos to examine walls from Rockall Bank and Whittard Canyon, Northeast Atlantic. High-resolution 3D point clouds were extracted from each sonar dataset and structure from motion photogrammetry (SfM) was applied to recreate 3D representations of video transects along the walls. With these reconstructions, it was possible to interact with extensive sections of video footage and precisely position individuals. Terrain variables were derived on scales comparable to those experienced by megabenthic individuals. These were used to show differences in environmental conditions between observed and background locations as well as explain spatial patterns in ecological characteristics. In addition, since the SfM 3D reconstructions retained colours, they were employed to separate and quantify live coral colonies versus dead framework. The combination of these new technologies allows us, for the first time, to map the physical 3D structure of previously inaccessible habitats and demonstrates the complexity and importance of vertical structures.

Entities:  

Year:  2017        PMID: 28827612      PMCID: PMC5567197          DOI: 10.1038/s41598-017-09382-z

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  9 in total

1.  Characterizing coral condition using estimates of three-dimensional colony surface area.

Authors:  William S Fisher; William P Davis; Robert L Quarles; James Patrick; Jed G Campbell; Peggy S Harris; Becky L Hemmer; Mel Parsons
Journal:  Environ Monit Assess       Date:  2007-02       Impact factor: 2.513

2.  Variation partitioning of species data matrices: estimation and comparison of fractions.

Authors:  Pedro R Peres-Neto; Pierre Legendre; Stéphane Dray; Daniel Borcard
Journal:  Ecology       Date:  2006-10       Impact factor: 5.499

3.  The interpretation of structure from motion.

Authors:  S Ullman
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-01-15

4.  DeepSurveyCam--A Deep Ocean Optical Mapping System.

Authors:  Tom Kwasnitschka; Kevin Köser; Jan Sticklus; Marcel Rothenbeck; Tim Weiß; Emanuel Wenzlaff; Timm Schoening; Lars Triebe; Anja Steinführer; Colin Devey; Jens Greinert
Journal:  Sensors (Basel)       Date:  2016-01-28       Impact factor: 3.576

5.  Object-Based Point Cloud Analysis of Full-Waveform Airborne Laser Scanning Data for Urban Vegetation Classification.

Authors:  Martin Rutzinger; Bernhard Höfle; Markus Hollaus; Norbert Pfeifer
Journal:  Sensors (Basel)       Date:  2008-08-04       Impact factor: 3.576

6.  A picture on the wall: innovative mapping reveals cold-water coral refuge in submarine canyon.

Authors:  Veerle A I Huvenne; Paul A Tyler; Doug G Masson; Elizabeth H Fisher; Chris Hauton; Veit Hühnerbach; Timothy P Le Bas; George A Wolff
Journal:  PLoS One       Date:  2011-12-14       Impact factor: 3.240

7.  Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs.

Authors:  Jhr Burns; D Delparte; R D Gates; M Takabayashi
Journal:  PeerJ       Date:  2015-07-07       Impact factor: 2.984

8.  End to End Digitisation and Analysis of Three-Dimensional Coral Models, from Communities to Corallites.

Authors:  Luis Gutierrez-Heredia; Francesca Benzoni; Emma Murphy; Emmanuel G Reynaud
Journal:  PLoS One       Date:  2016-02-22       Impact factor: 3.240

9.  A vertical wall dominated by Acesta excavata and Neopycnodonte zibrowii, part of an undersampled group of deep-sea habitats.

Authors:  Mark P Johnson; Martin White; Annette Wilson; Laura Würzberg; Enrico Schwabe; Helka Folch; A Louise Allcock
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

  9 in total
  2 in total

1.  Towards a sampling design for characterizing habitat-specific benthic biodiversity related to oxygen flux dynamics using Aquatic Eddy Covariance.

Authors:  Iván F Rodil; Karl M Attard; Joanna Norkko; Ronnie N Glud; Alf Norkko
Journal:  PLoS One       Date:  2019-02-04       Impact factor: 3.240

2.  Capturing complexity: field-testing the use of 'structure from motion' derived virtual models to replicate standard measures of reef physical structure.

Authors:  Daniel T I Bayley; Andrew O M Mogg; Heather Koldewey; Andy Purvis
Journal:  PeerJ       Date:  2019-03-04       Impact factor: 2.984

  2 in total

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