Literature DB >> 28825061

HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data.

Emily Berger1,2,3, Deniz Yorukoglu2, Bonnie Berger1,2.   

Abstract

Entities:  

Year:  2015        PMID： 28825061      PMCID： PMC5558598          DOI： 10.1007/978-3-319-16706-0_4

Source DB:  PubMed          Journal:  Res Comput Mol Biol


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  3 in total

1.  HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.

Authors:  Vikas Bansal; Vineet Bafna
Journal:  Bioinformatics       Date:  2008-08-15       Impact factor: 6.937

2.  HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.

Authors:  Emily Berger; Deniz Yorukoglu; Jian Peng; Bonnie Berger
Journal:  PLoS Comput Biol       Date:  2014-03-27       Impact factor: 4.475

3.  Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression.

Authors:  David Serre; Scott Gurd; Bing Ge; Robert Sladek; Donna Sinnett; Eef Harmsen; Marina Bibikova; Eugene Chudin; David L Barker; Todd Dickinson; Jian-Bing Fan; Thomas J Hudson
Journal:  PLoS Genet       Date:  2008-02-29       Impact factor: 5.917
  3 in total
  3 in total

1.  Rare variant phasing and haplotypic expression from RNA sequencing with phASER.

Authors:  Stephane E Castel; Pejman Mohammadi; Wendy K Chung; Yufeng Shen; Tuuli Lappalainen
Journal:  Nat Commun       Date:  2016-09-08       Impact factor: 14.919

Review 2.  Computational methods for chromosome-scale haplotype reconstruction.

Authors:  Shilpa Garg
Journal:  Genome Biol       Date:  2021-04-12       Impact factor: 13.583

3.  Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets.

Authors:  Emily Berger; Deniz Yorukoglu; Lillian Zhang; Sarah K Nyquist; Alex K Shalek; Manolis Kellis; Ibrahim Numanagić; Bonnie Berger
Journal:  Nat Commun       Date:  2020-09-16       Impact factor: 14.919
  3 in total

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