| Literature DB >> 28824302 |
Yang Song1,2, Zhen-Wu Du1,3,2, Qi-Wei Yang3,2, Ming Ren1,3, Qing-Yu Wang3,2, Ao Wang1,2, Gao-Yang Chen3,2, Hai-Yue Zhao3,2, Tao Yu1,3, Gui-Zhen Zhang1,3,2.
Abstract
The RANKL/RANK/OPG pathway plays an important role in regulating bone remodeling and bone turnover. However, the association of the genes variants with the risk of ONFH has rarely been reported. Here, we analyzed the correlation of the 10 SNPs polymorphisms of RANKL, RANK, OPG, TRAF6, and NFATC1 genes with the risk and development of ONFH in 200 ONFH patients and 177 health controls of Chinese population with using Mass ARRAY® platform. The results showed that the recessive model of NFATC1rs9518 was significantly associated with increased ONFH risk (OR:8.223, P=0.048); the proportion of stage Ⅳ patients in the rs9518TC genotype carriers was statistically higher than that of stage Ⅲ patients (P=0.03); in the T-C haplotype carriers of Naftac1, the proportion of bilateral hips lesions was also significantly enhanced than that of unilateral hip lesions(P=0.05). In addition, the proportion of idiopathic ONFH in the TT genotype carriers of OPGrs2073617 was significantly higher than that of steroid or alcohol-induced ONFH, respectively, while in the TC genotype carriers of the SNP, the proportion of idiopathic ONFH remarkably decreased compared with that of Alcohol-induced ONFH, P=0.021. Our results were first found that NFATC1rs9518 closely associated with the risk and the development of ONFH, while OPGrs2073617 statistically correlated with the etiological classification of ONFH.Entities:
Keywords: NFATC1.; ONFH; RANKL/RANK/OPG pathway; TRAF6; gene polymorphism
Mesh:
Substances:
Year: 2017 PMID: 28824302 PMCID: PMC5562121 DOI: 10.7150/ijms.19124
Source DB: PubMed Journal: Int J Med Sci ISSN: 1449-1907 Impact factor: 3.738
Basic information of 10 SNPS in OPG, R ANK, RANKL, TRAF6, and NFATC1 genes
| Gene | Chromosome | SNP rs ID | Allele | Minor Allele | Function |
|---|---|---|---|---|---|
| OPG | 8q24 | rs2073617 | C/T | C | 5'UTR |
| rs2073618 | G/C | C | Missense | ||
| RANK | 18q22.1 | rs884205 | G/T | T | 3'UTR |
| RANKL | 13q14 | rs7984870 | C/G | C | Promoter |
| rs9525641 | C/T | C | Promoter | ||
| rs1054016 | G/T | T | Promoter | ||
| NFATC1 | 18q23 | rs754093 | G/T | G | Missense |
| rs9518 | C/T | C | 3'UTR | ||
| TRAF6 | 11p12 | rs5030411 | C/T | C | Promoter |
| rs5030416 | A/C | C | Promoter |
UTR: untranslated regions
List of PCR and sequencing primers of 10 SNPs
| Gene | SNP-ID | PCR primer | Product length (bp) | Sequencing | Molecular weight |
|---|---|---|---|---|---|
| RUNX2 | rs3763190 | 5'ACGTTGGATGCAGAACTAGACTCCGTCAAA3' | 109 | CACGCACAACAAAAGTTAATGAGA | 7371.8 |
| 5'ACGTTGGATGAACTCAGTTTCCCTTCTCC 3' | |||||
| rs7751427 | 5'ACGTTGGATGTCTCAGCACTCTTCACCCTC 3' | 87 | CTTCACCCTCCCACCTC | 4962.2 | |
| 5'ACGTTGGATGTCTTTTTCCCTTGGGAGTCG 3' | |||||
| PPARγ | rs2920502 | 5'ACGTTGGATGCGCACAGTAGGGCCCACGG 3' | 100 | CGCAACCGGCTTTCCCGCGTCCACT | 7514.9 |
| 5'ACGTTGGATGAACGACACCAGGTAGCCTGC 3' | |||||
| IGFBP3 | rs2132572 | 5'ACGTTGGATGAGAAGACTCTCACGTGTTGC 3' | 93 | GCTACACCGCAAGTC | 4522 |
| 5'ACGTTGGATGCTTAAGGACGCATTCGCTTG 3' | |||||
| rs2854744 | 5'ACGTTGGATGTGCAGCTCGAGACTCGCCC' 3' | 105 | CCTGAACCTGCTCCTCGTGC | 6004.9 | |
| 5'ACGTTGGATGCACCTTGGTTCTTGTAGACG 3' | |||||
| rs2854746 | 5'ACGTTGGATGTCGCAGCGCACCACGGGAC 3' | 105 | GTGCCCCACGGGACCCAAGCCC | 6651.3 | |
| 5'ACGTTGGATGTGACTCTGCTGGTGCTGCTC 3' | |||||
| COL2A1 | rs1859444 | 5'ACGTTGGATGCTCTCACCTTAGCCAAACTG 3' | 100 | TTAGCCAAACTGCCTTCT | 5409.5 |
| 5'ACGTTGGATGTGGTATGAAAGGAGGCACCG 3' | |||||
| rs2070739 | 5'ACGTTGGATGGAACAGCATTGCCTATCTGG 3' | 95 | ATATCTGGACGAAGCAGCT | 5836.8 | |
| 5'ACGTTGGATGACGTCATTGGAGCCCTGGAT 3' | |||||
| rs3803183 | 5'ACGTTGGATGAGACTTACGGACATCCTGGC 3' | 119 | GGGGAGTCAGCAGCACCAGCG | 6506.2 | |
| 5'ACGTTGGATGTGAGCCATGATTCGCCTCG 3' | |||||
| rs3809322 | 5'ACGTTGGATGGGTTAAAGCCCCTCTGAGAA 3' | 112 | TCTGATATCTCTAGAACACAA | 6373.2 | |
| 5'ACGTTGGATGGCTTAGGCTATAAATGCCAG 3' | |||||
| Osteris | rs4759113 | ACGTTGGATGTCCTGATCTAGAGGCAGGTG | 124 | CCTGACTGGGGAAGCAA | 5244.4 |
| ACGTTGGATGACAAATGCACACAGTGACGC |
Figure 1Genotyping of 10SNPs in the RANKL, RANK, OPG, TRAF6, and NFATC1 genes by MALDI-ToF-MS. The green plots represents heterozygous genotypes, yellow and blue plots represent major homozygous or minor homozygous genotypes in the call cluster plot of each SNP, respectively. MALDI-ToF-MS: matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Association of gene genotypes and allele frequencies in the OPG, RANK, RANKL, Traf6, and Nfatcl genes with the risk of ONFH
| Gene | dbSNP | Group | Genotype(n) | MAF | HWEa | Co-dominants | Dominants | Recessives | Allele 2 vs. 1 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | 12 | 22 | OR (95%CI) | OR (95%CI) | OR (95%CI) | OR (95%CI) | ||||||
| OPG | rs2073617 | TT | TC | CC | ||||||||
| Control | 59 | 85 | 33 | 0.427 | 0.807 | 0.990 | 0.989(0.738-1.325) | 0.942(0.606-1.464) | 1.052(0.618-1.791) | 0.982 (0.735-1.312) | ||
| Case | 67 | 96 | 36 | 0.422 | 0.875 | 0.940 | 0.789 | 0.852 | 0.902 | |||
| rs2073618 | GG | GC | CC | |||||||||
| Control | 93 | 70 | 14 | 0.277 | 0.870 | 0.726 | 0.972(0.701-1.332) | 0.997(0.658-1.512) | 0.855(0.382-1.915) | 0.966 (0.701-1.332) | ||
| Case | 104 | 84 | 12 | 0.270 | 0.355 | 0.966 | 0.990 | 0.704 | 0.833 | |||
| Rank | rs884205 | GG | GT | TT | ||||||||
| Control | 106 | 64 | 7 | 0.220 | 0.486 | 0.280 | 1.312(0.913-1.886) | 1.294(0.843-1.958) | 1.350(0.497-3.671) | 0.767 (0.545-1.080) | ||
| Case | 94 | 78 | 10 | 0.277 | 0.229 | 0.142 | 0.239 | 0.556 | 0.128 | |||
| RankL | rs1054016 | GG | GT | TT | ||||||||
| Control | 49 | 91 | 37 | 0.466 | 0.661 | 0.792 | 0.859(0.629-1.173) | 0.863(0.540P-1.380) | 0.766(0.444-1.321) | 1.105(0.823-1.485) | ||
| Case | 55 | 90 | 34 | 0.430 | 0.792 | 0.339 | 0.539 | 0.338 | 0.507 | |||
| rs7984870 | GG | GC | CC | |||||||||
| Control | 51 | 88 | 36 | 0.457 | 0.862 | 0.653 | 1.057(0.764-1.463) | 1.194(0.736-1.890) | 0.947(0.543-1.649) | 1.141(0.838-1.554) | ||
| Case | 37 | 79 | 34 | 0.490 | 0.510 | 0.739 | 0.490 | 0.307 | 0.403 | |||
| rs9525641 | TT | TC | CC | |||||||||
| Control | 50 | 90 | 36 | 0.460 | 0.689 | 0.515 | 0.978(0.715-1.336) | 1.179(0.736-1.890) | 0.765(0.442-1.293) | 1.028(0.771-1.371) | ||
| Case | 49 | 113 | 36 | 0.467 | 0.039 | 0.887 | 0.493 | 0.307 | 0.849 | |||
| Traf6 | rs5030411 | TT | TC | CC | ||||||||
| Control | 93 | 72 | 12 | 0.271 | 0.699 | 0.721 | 1.049(0.760-1.449) | 0.970(0.641-1.470) | 1.439(0.670-3.091) | 1.092(0.794-1.503) | ||
| Case | 102 | 79 | 18 | 0.289 | 0.632 | 0.771 | 0.887 | 0.351 | 0.588 | |||
| rs5030416 | AA | AC | CC | |||||||||
| Control | 126 | 48 | 3 | 0.379 | 0.515 | 0.691 | 0.920(0.609-1.390) | 0.857(0.538-1.363) | 1.591(0.371-6.813) | 1.040(0.697-1.552) | ||
| Case | 146 | 49 | 5 | 0.148 | 0.715 | 0.771 | 0.513 | 0.532 | 0.847 | |||
| Nfatc1 | rs754093 | TT | TG | GG | ||||||||
| Control | 69 | 82 | 26 | 0.379 | 0.838 | 0.691 | 0.907(0.669-1.230) | 0.848(0.551-1.303) | 0.944(0.519-1.715) | 0.892(0.662-1.202) | ||
| Case | 85 | 84 | 27 | 0.350 | 0.396 | 0.529 | 0.451 | 0.849 | 0.453 | |||
| rs9518 | TT | TC | CC | |||||||||
| Control | 123 | 55 | 1 | 0.159 | 0.061 | 0.057 | 1.163(0.780-1.735) | 1.011(0.645-1.586) | 8.223(1.015-66.651) | 1.055(0.713-1.560) | ||
| Case | 143 | 49 | 8 | 0.163 | 0.158 | 0.458 | 0.962 | 0.048 | 0.789 | |||
11: homozygotes for the major allele, 12: heterozygotes and 22: homozygotes for the minor allele.
ap-values of deviation from Hardy-Weinberg equilibrium between the ONFH group and control group.
b χ2 test were used for frequencies of genotype analyses
c Logistic regression analyses were used for calculations. bold: p-value < 0.05
The association of SNPs genotypes in OPG, RANK, RANKL, TRAF6, and NFATC1 genes with the clinical phenotypes of ONFH
| Gene ID | SNP ID | Geno-type | Gender n(%) | Age (yr) | Etiological Classification | Involved hip lesions n(%) X2 text | Clinical stage | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| male | female | Alca | Ster | Idio | Unilateral | Bilateral | StageⅡ | Stage Ⅲ | Stage Ⅳ | ||||||||
| OPG | 24(20.0) | 9(15.5) | 47.18±10.59 | 13(18.6) | 11(23.4) | 9(14.8) | 13(17.1) | 20(19.6) | 1(10.0) | 14(25.9) | 18(15.8) | ||||||
| 36(30.0) | 24(41.4) | 45.85±12.81 | 16(22.9) | 14(29.8) | 30(49.2) | 29(38.2) | 31(30.4) | 7(70.0) | 15(27.8) | 38(33.3) | |||||||
| 60(50.0) | 25(43.1) | 48.95±12.31 | 41(58.6) | 22(46.8) | 22(36.1) | 34(44.7) | 51(50.0) | 2(20.0) | 25(46.3) | 58(50.9) | |||||||
| 0.314 | 0.317 | 0.021* | 0.555 | 0.066 | |||||||||||||
| rs2073618 | GG | 65(53.7) | 29(50.0) | 46.89±12.20 | 31(43.7) | 24(51.1) | 39(63.9) | 40(52.6) | 54(52.4) | 8(80.0) | 24(44.4) | 62(53.9) | |||||
| CC | 8(6.6) | 2(3.4) | 51.30±5.14 | 4(5.6) | 2(4.3) | 4(6.6) | 4(5.3) | 6(5.8) | 1(10.0) | 3(5.6) | 6(5.2) | ||||||
| GC | 48(39.7) | 27(46.6) | 48.02±12.79 | 36(50.7) | 21(44.7) | 18(29.5) | 32(42.1) | 43(41.7) | 1(10.0) | 27(50.0) | 47(40.9) | ||||||
| 0.536 | 0.517 | 0.166 | 0.987 | 0.212 | |||||||||||||
| RANK | rs884205 (G/T) | GG | 61(53.5) | 25(49.0) | 47.12±12.84 | 36(55.4) | 24(54.5) | 26(46.4) | 36(54.5) | 50(50.5) | 4(40.0) | 26(52.0) | 56(53.3) | ||||
| TT | 7(6.1) | 3(5.9) | 45.35±9.16 | 3(4.6) | 2(4.5) | 5(8.9) | 1(1.5) | 9(9.1) | 1(10.0) | 2(4.0) | 7(6.7) | ||||||
| GT | 46(40.4) | 23(45.1) | 48.26±12.23 | 26(40.0) | 18(40.9) | 25(44.6) | 29(43.9) | 40(40.4) | 5(50.0) | 22(44.0) | 42(40.0) | ||||||
| 0.848 | 0.725 | 0.764 | 0.136 | 0.864 | |||||||||||||
| RANKL | rs1054016 | GG | 31(29.0) | 18(34.0) | 46.60±11.75 | 17(26.6) | 15(36.6) | 17(30.9) | 21(31.8) | 28(29.8) | 4(40.0) | 17(35.4) | 28(27.5) | ||||
| TT | 18(16.8) | 9(17.0) | 44.15±12.30 | 15(23.4) | 5(12.2) | 7(12.7) | 9(13.6) | 18(19.1) | 1(10.0) | 7(14.6) | 19(18.6) | ||||||
| GT | 58(54.2) | 26(49.1) | 48.38±12.49 | 32(50.0) | 21(51.2) | 31(56.4) | 36(54.5) | 48(51.1) | 5(50.0) | 24(50.0) | 55(53.9) | ||||||
| 0.791 | 0.28 | 0.435 | 0.657 | 0.790 | |||||||||||||
| rs79848709 | GG | 20(22.0) | 15(33.3) | 46.52±12.22 | 10(18.9) | 14(38.9) | 11(23.4) | 14(25.0) | 21(26.3) | 3(33.3) | 12(32.4) | 20(22.2) | |||||
| (C/G) | CC | 18(19.8) | 8(17.8) | 45.52±12.63 | 14(26.4) | 3(8.3) | 9(19.1) | 10(17.9) | 16(20.0) | 1(11.1) | 3(8.1) | 22(24.4) | |||||
| GC | 53(58.2) | 22(48.9) | 47.94±13.19 | 29(54.7) | 19(52.8) | 27(57.4) | 32(17.9) | 43(53.8) | 5(55.6) | 22(59.5) | 48(53.3) | ||||||
| 0.359 | 0.677 | 0.124 | 0.919 | 0.245 | |||||||||||||
| rs9525641 | CC | 21(17.6) | 8(13.8) | 45.03±12.01 | 16(23.2) | 5(10.6) | 8(13.1) | 10(13.2) | 19(18.8) | 1(10.0) | 7(13.0) | 21(18.6) | |||||
| (C/T) | TT | 28(23.5) | 16(27.6) | 47.78±11.29 | 14(20.3) | 15(31.9) | 15(24.6) | 17(22.4) | 27(26.7) | 3(30.0) | 16(29.6) | 25(22.1) | |||||
| TC | 70(58.8) | 34(58.6) | 48.20±12.68 | 39(56.5) | 27(57.4) | 38(62.3) | 49(64.5) | 55(54.5) | 6(60.0) | 31(57.4) | 67(59.3) | ||||||
| P | 0.736 | 0.467 | 0.285 | 0.383 | 0.748 | ||||||||||||
| TRAF6 | rs5030411 | CC | 11(9.2) | 6(10.3) | 49.65±11.68 | 6(8.6) | 4(8.5) | 7(11.5) | 5(6.6) | 12(11.8) | 2(20.0) | 8(14.8) | 7(6.1) | ||||
| (C/T) | TT | 63(52.5) | 30(51.7) | 47.88±11.52 | 36(51.4) | 28(59.6) | 29(47.5) | 44(57.9) | 49(48.0) | 6(60.0) | 27(50.0) | 60(52.6) | |||||
| TC | 46(38.3) | 22(37.9) | 46.63±13.28 | 28(40.0) | 15(31.9) | 25(41.0) | 27(35.5) | 41(40.2) | 2(20.0) | 19(35.2) | 47(41.2) | ||||||
| P | 0.969 | 0.622 | 0.776 | 0.319 | 0.236 | ||||||||||||
| rs5030416 | CC | 5(4.1) | 0(0.0) | 46.40±15.13 | 4(5.6) | 1(2.1) | 0(0.0) | 2(2.6) | 3(2.9) | 0(0.0) | 3(5.6) | 2(1.7) | |||||
| (A/C) | AA | 87(71.9) | 45(77.6) | 47.80±12.18 | 53(74.6) | 36(76.6) | 43(70.5) | 62(81.6) | 70(68.0) | 7(70.0) | 39(72.2) | 86(74.8) | |||||
| CA | 29(24.0) | 13(22.4) | 47.16±12.11 | 14(19.7) | 10(21.3) | 18(29.5) | 12(15.8) | 30(29.1) | 3(30.0) | 12(22.2) | 27(23.5) | ||||||
| P | 0.271 | 0.934 | 0.244 | 0.109 | 0.648 | ||||||||||||
| NFATC1 | rS754093 | GG | 14(11.9) | 9(15.8) | 44.4±12.9 | 9(12.9) | 7(15.6) | 7(11.7) | 8(10.7) | 15(15.0) | 1(10.0) | 7(15.1) | 14(12.5) | ||||
| (T/G) | GT | 58(49.2) | 18(31.6) | 47.0±11.6 | 28(40.0) | 24(53.3) | 24(40.0) | 34(45.3) | 42(42.0) | 5(50.0) | 26(49.1) | 45(40.2) | |||||
| TT | 46(39.0) | 30(52.6) | 48.6±12.4 | 33(47.1) | 14(31.1) | 29(48.3) | 33(44.0) | 43(43.0) | 4(40.0) | 19(35.8) | 56(47.3) | ||||||
| P | 0.086 | 0.324 | 0.434 | 0.694 | 0.710 | ||||||||||||
| Rs9518 | TT | 86(71.1) | 39(67.2) | 47.4±12.7 | 51(71.8) | 31(66.0) | 43(70.5) | 58(76.4) | 67(71.9) | 6(60.0) | 41(75.9) | 78(67.8) | |||||
| TC | 28(23.1) | 18(31.0) | 48.7±11.0 | 17(23.9) | 11(23.4) | 18(29.5) | 15(19.7) | 31(26.5) | 4(40.0) | 8(14.8) | 34(29.6) | ||||||
| CC | 7(5.8) | 1(1.7) | 44.4±12.7 | 3(4.2) | 5(10.6) | 0(0.0) | 3(3.9) | 5(4.9) | 0(0.0) | 5(9.3) | 3(2.6) | ||||||
| P | 0.289 | 0.461 | 0.116 | 0.277 | 0.073(0.030)* | ||||||||||||
a:Alc : Alcohol-induced; Ster: steroid- induced; Idio: idiopathic; * stageⅡvs stageⅢvs stageⅣ:P=0.073: stageⅢ vs stageⅣP=0.030
Association of SNPs haplotypes in the OPG, TRAF6, RANKL, and NFATC1 genes with unilateral or bilateral hip lesions of ONFH
| SNPs | Haplotype | Bil▲n(freq) | Unil▼n(freq) | χ2 | P | OR(95%CI) |
|---|---|---|---|---|---|---|
| OPG: | C-C | 55.00(0.270) | 37.66(0.248) | 0.144 | 0.70 | 1.098 (0.678~1.777) |
| G-C | 36.00(0.176) | 22.34(0.147) | 0.465 | 0.49 | 1.222 (0.687~2.173) | |
| G-T | 113.00(0.554) | 89.66(0.590) | 0.720 | 0.39 | 0.831(0.542~1.275) | |
| TRAF6 : | C-A | 29.00(0.14) | 21.00(0.13) | 0.012 | 0.91 | 1.034 (0.564~1.894) |
| C-C | 36.00(0.176) | 16.00(0.105) | 3.540 | 0.06 | 1.821 (0.969~3.423) | |
| T-A | 139.00(0.681) | 115.00(0.75) | 2.410 | 0.12 | 0.688(0.429~1.104) | |
| RANKL: | C-C-G | 3.04(0.020) | 5.12(0.047) | 1.661 | 0.19 | 0.399 (0.095~1.687) |
| C-C-T | 68.96(0.442) | 42.88(0.390) | 0.536 | 0.46 | 1.206 (0.730~1.993) | |
| C-T-G | 0.00(0.000) | 2.00(0.018) | _ | _ | _ | |
| G-T-G | 80.96(0.519) | 57.88(0.526) | 0.076 | 0.78 | 0.933 (0.567~1.533) | |
| G-T-T | 2.04(0.013) | 2.12(0.019) | _ | _ | _ | |
| G-C-T | 1.00(0.006) | 0.00(0.000) | _ | _ | _ | |
| Nfatc1: | G-C | 14.31(0.072) | 10.58(0.071) | 0.001 | 0.97 | 1.015 (0.445~2.316) |
| G-T | 57.69(0.288) | 39.42(0.263) | 0.282 | 0.59 | 1.137 (0.707~1.829) | |
| T-C | 26.69(0.133) | 10.42(0.069) | 3.703 | 0.05 | 2.063 (0.975~4.367) | |
| T-T | 101.31(0.507) | 89.58(0.597) | 2.842 | 0.09 | 0.692(0.451~1.062) |
bilateral hips lesions; unilateral hip lesions