Literature DB >> 28813649

A Case for a Human Immuno-Peptidome Project Consortium.

Etienne Caron1, Ruedi Aebersold2, Amir Banaei-Esfahani3, Chloe Chong4, Michal Bassani-Sternberg5.   

Abstract

A multidisciplinary group of researchers gathered at the Hönggerberg Campus at ETH Zurich, Switzerland, for the first meeting on the Human Immuno-Peptidome Project (https://hupo.org/human-immuno-peptidome-project/). The long-term goal of this project is to map the entire repertoire of peptides presented by human leukocyte antigen molecules using mass spectrometry technologies, and make its robust analysis accessible to any immunologist. Here we outline the specific challenges identified toward this goal, and within this framework, describe the structure of a multipronged program aimed at addressing these challenges and implementing solutions at a community-wide level. Pillars of that program are: (1) method and technology development, (2) standardization, (3) effective data sharing, and (4) education. If successful, this community-driven endeavor might provide a roadmap toward new paradigms in immunology.
Copyright © 2017.

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Year:  2017        PMID: 28813649     DOI: 10.1016/j.immuni.2017.07.010

Source DB:  PubMed          Journal:  Immunity        ISSN: 1074-7613            Impact factor:   31.745


  29 in total

1.  Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors.

Authors:  Shutao Mei; Rochelle Ayala; Sri H Ramarathinam; Patricia T Illing; Pouya Faridi; Jiangning Song; Anthony W Purcell; Nathan P Croft
Journal:  Mol Cell Proteomics       Date:  2020-05-01       Impact factor: 5.911

Review 2.  Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry.

Authors:  Lena Katharina Freudenmann; Ana Marcu; Stefan Stevanović
Journal:  Immunology       Date:  2018-05-08       Impact factor: 7.397

Review 3.  Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.

Authors:  Gilbert S Omenn; Lydie Lane; Christopher M Overall; Fernando J Corrales; Jochen M Schwenk; Young-Ki Paik; Jennifer E Van Eyk; Siqi Liu; Michael Snyder; Mark S Baker; Eric W Deutsch
Journal:  J Proteome Res       Date:  2018-08-23       Impact factor: 4.466

4.  T-Cell Immunopeptidomes Reveal Cell Subtype Surface Markers Derived From Intracellular Proteins.

Authors:  Niclas Olsson; Liora M Schultz; Lichao Zhang; Michael S Khodadoust; Rupa Narayan; Debra K Czerwinski; Ronald Levy; Joshua E Elias
Journal:  Proteomics       Date:  2018-04-18       Impact factor: 3.984

5.  The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Authors:  Juan Antonio Vizcaíno; Peter Kubiniok; Kevin A Kovalchik; Qing Ma; Jérôme D Duquette; Ian Mongrain; Eric W Deutsch; Bjoern Peters; Alessandro Sette; Isabelle Sirois; Etienne Caron
Journal:  Mol Cell Proteomics       Date:  2019-11-19       Impact factor: 5.911

6.  Peptide-Spectrum Match Validation with Internal Standards (P-VIS): Internally-Controlled Validation of Mass Spectrometry-Based Peptide Identifications.

Authors:  Timothy Aaron Wiles; Laura M Saba; Thomas Delong
Journal:  J Proteome Res       Date:  2020-09-29       Impact factor: 4.466

Review 7.  Identification and Characterization of Neoantigens As Well As Respective Immune Responses in Cancer Patients.

Authors:  Eva Bräunlein; Angela M Krackhardt
Journal:  Front Immunol       Date:  2017-11-30       Impact factor: 7.561

Review 8.  Deciphering Human Leukocyte Antigen Susceptibility Maps From Immunopeptidomics Characterization in Oncology and Infections.

Authors:  Pablo Juanes-Velasco; Alicia Landeira-Viñuela; Vanessa Acebes-Fernandez; Ángela-Patricia Hernández; Marina L Garcia-Vaquero; Carlota Arias-Hidalgo; Halin Bareke; Enrique Montalvillo; Rafael Gongora; Manuel Fuentes
Journal:  Front Cell Infect Microbiol       Date:  2021-05-28       Impact factor: 5.293

Review 9.  Mining the Biomarker Potential of the Urine Peptidome: From Amino Acids Properties to Proteases.

Authors:  Fábio Trindade; António S Barros; Jéssica Silva; Antonia Vlahou; Inês Falcão-Pires; Sofia Guedes; Carla Vitorino; Rita Ferreira; Adelino Leite-Moreira; Francisco Amado; Rui Vitorino
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

10.  High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome.

Authors:  Chloe Chong; Fabio Marino; HuiSong Pak; Julien Racle; Roy T Daniel; Markus Müller; David Gfeller; George Coukos; Michal Bassani-Sternberg
Journal:  Mol Cell Proteomics       Date:  2017-12-14       Impact factor: 5.911

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