Literature DB >> 28812630

Our path to better science in less time using open data science tools.

Julia S Stewart Lowndes1, Benjamin D Best2, Courtney Scarborough1, Jamie C Afflerbach1, Melanie R Frazier1, Casey C O'Hara1, Ning Jiang1, Benjamin S Halpern1,3,4.   

Abstract

Reproducibility has long been a tenet of science but has been challenging to achieve-we learned this the hard way when our old approaches proved inadequate to efficiently reproduce our own work. Here we describe how several free software tools have fundamentally upgraded our approach to collaborative research, making our entire workflow more transparent and streamlined. By describing specific tools and how we incrementally began using them for the Ocean Health Index project, we hope to encourage others in the scientific community to do the same-so we can all produce better science in less time.

Year:  2017        PMID: 28812630     DOI: 10.1038/s41559-017-0160

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  35 in total

1.  Scientific Data Management in the Age of Big Data: An Approach Supporting a Resilience Index Development Effort.

Authors:  Linda C Harwell; Deborah N Vivian; Michelle D McLaughlin; Stephen F Hafner
Journal:  Front Environ Sci       Date:  2019-06-04

2.  Making Mountains out of Molehills: Challenges for Implementation of Cross-Disciplinary Research in the Big Data Era.

Authors:  Daniel Andresen; Eugene Vasserman
Journal:  Merrrill Ser Res Mission Public Univ       Date:  2019-12-20

3.  MoveApps: a serverless no-code analysis platform for animal tracking data.

Authors:  Andrea Kölzsch; Sarah C Davidson; Dominik Gauggel; Clemens Hahn; Julian Hirt; Roland Kays; Ilona Lang; Ashley Lohr; Benedict Russell; Anne K Scharf; Gabriel Schneider; Candace M Vinciguerra; Martin Wikelski; Kamran Safi
Journal:  Mov Ecol       Date:  2022-07-18       Impact factor: 5.253

Review 4.  Lessons from a pandemic for systems-oriented sustainability research.

Authors:  Noelle E Selin
Journal:  Sci Adv       Date:  2021-05-26       Impact factor: 14.136

5.  A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture.

Authors:  Antje Gimpel; Vanessa Stelzenmüller; Sandra Töpsch; Ibon Galparsoro; Matthew Gubbins; David Miller; Arantza Murillas; Alexander G Murray; Kemal Pınarbaşı; Guillem Roca; Robert Watret
Journal:  Sci Total Environ       Date:  2018-02-18       Impact factor: 7.963

6.  A funder-imposed data publication requirement seldom inspired data sharing.

Authors:  Jessica L Couture; Rachael E Blake; Gavin McDonald; Colette L Ward
Journal:  PLoS One       Date:  2018-07-06       Impact factor: 3.240

7.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Authors:  Lisa Harper; Jacqueline Campbell; Ethalinda K S Cannon; Sook Jung; Monica Poelchau; Ramona Walls; Carson Andorf; Elizabeth Arnaud; Tanya Z Berardini; Clayton Birkett; Steve Cannon; James Carson; Bradford Condon; Laurel Cooper; Nathan Dunn; Christine G Elsik; Andrew Farmer; Stephen P Ficklin; David Grant; Emily Grau; Nic Herndon; Zhi-Liang Hu; Jodi Humann; Pankaj Jaiswal; Clement Jonquet; Marie-Angélique Laporte; Pierre Larmande; Gerard Lazo; Fiona McCarthy; Naama Menda; Christopher J Mungall; Monica C Munoz-Torres; Sushma Naithani; Rex Nelson; Daureen Nesdill; Carissa Park; James Reecy; Leonore Reiser; Lacey-Anne Sanderson; Taner Z Sen; Margaret Staton; Sabarinath Subramaniam; Marcela Karey Tello-Ruiz; Victor Unda; Deepak Unni; Liya Wang; Doreen Ware; Jill Wegrzyn; Jason Williams; Margaret Woodhouse; Jing Yu; Doreen Main
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

Review 8.  Towards operando computational modeling in heterogeneous catalysis.

Authors:  Lukáš Grajciar; Christopher J Heard; Anton A Bondarenko; Mikhail V Polynski; Jittima Meeprasert; Evgeny A Pidko; Petr Nachtigall
Journal:  Chem Soc Rev       Date:  2018-11-12       Impact factor: 54.564

9.  Scientists' warning on extreme wildfire risks to water supply.

Authors:  François-Nicolas Robinne; Dennis W Hallema; Kevin D Bladon; Mike D Flannigan; Gabrielle Boisramé; Christian M Bréthaut; Stefan H Doerr; Giuliano Di Baldassarre; Louise A Gallagher; Amanda K Hohner; Stuart J Khan; Alicia M Kinoshita; Rua Mordecai; João Pedro Nunes; Petter Nyman; Cristina Santín; Gary Sheridan; Cathelijne R Stoof; Matthew P Thompson; James M Waddington; Yu Wei
Journal:  Hydrol Process       Date:  2021-05-16       Impact factor: 3.565

10.  A user-friendly tool to evaluate the effectiveness of no-take marine reserves.

Authors:  Juan Carlos Villaseñor-Derbez; Caio Faro; Melaina Wright; Jael Martínez; Sean Fitzgerald; Stuart Fulton; Maria Del Mar Mancha-Cisneros; Gavin McDonald; Fiorenza Micheli; Alvin Suárez; Jorge Torre; Christopher Costello
Journal:  PLoS One       Date:  2018-01-30       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.