Literature DB >> 28812572

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA.

Eva Egelyng Sigsgaard1,2, Ida Broman Nielsen1, Steffen Sanvig Bach3, Eline D Lorenzen2, David Philip Robinson4, Steen Wilhelm Knudsen2, Mikkel Winther Pedersen1, Mohammed Al Jaidah5, Ludovic Orlando1, Eske Willerslev1,6,7, Peter Rask Møller2, Philip Francis Thomsen1.   

Abstract

Population genetics is essential for understanding and managing marine ecosystems, but sampling remains challenging. We demonstrate that high-throughput sequencing of seawater environmental DNA can provide useful estimates of genetic diversity in a whale shark (Rhincodon typus) aggregation. We recover similar mitochondrial haplotype frequencies in seawater compared to tissue samples, reliably placing the studied aggregation in a global genetic context and expanding the applications of environmental DNA to encompass population genetics of aquatic organisms.

Entities:  

Year:  2016        PMID: 28812572     DOI: 10.1038/s41559-016-0004

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  32 in total

1.  Delivering on seafood traceability under the new U.S. import monitoring program.

Authors:  Demian A Willette; Samantha H Cheng
Journal:  Ambio       Date:  2017-08-07       Impact factor: 5.129

2.  Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment.

Authors:  Michael Stat; Megan J Huggett; Rachele Bernasconi; Joseph D DiBattista; Tina E Berry; Stephen J Newman; Euan S Harvey; Michael Bunce
Journal:  Sci Rep       Date:  2017-09-25       Impact factor: 4.379

3.  Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact.

Authors:  Judith Bakker; Owen S Wangensteen; Demian D Chapman; Germain Boussarie; Dayne Buddo; Tristan L Guttridge; Heidi Hertler; David Mouillot; Laurent Vigliola; Stefano Mariani
Journal:  Sci Rep       Date:  2017-12-04       Impact factor: 4.379

4.  The effect of tides on nearshore environmental DNA.

Authors:  Ryan P Kelly; Ramón Gallego; Emily Jacobs-Palmer
Journal:  PeerJ       Date:  2018-03-19       Impact factor: 2.984

5.  Estimating intraspecific genetic diversity from community DNA metabarcoding data.

Authors:  Vasco Elbrecht; Ecaterina Edith Vamos; Dirk Steinke; Florian Leese
Journal:  PeerJ       Date:  2018-04-09       Impact factor: 2.984

6.  Environmental DNA illuminates the dark diversity of sharks.

Authors:  Germain Boussarie; Judith Bakker; Owen S Wangensteen; Stefano Mariani; Lucas Bonnin; Jean-Baptiste Juhel; Jeremy J Kiszka; Michel Kulbicki; Stephanie Manel; William D Robbins; Laurent Vigliola; David Mouillot
Journal:  Sci Adv       Date:  2018-05-02       Impact factor: 14.136

7.  Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities.

Authors:  Hirotoshi Sato; Yuki Sogo; Hideyuki Doi; Hiroki Yamanaka
Journal:  Sci Rep       Date:  2017-11-01       Impact factor: 4.379

8.  Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats.

Authors:  Eva Egelyng Sigsgaard; Felipe Torquato; Tobias Guldberg Frøslev; Alec B M Moore; Johan Mølgård Sørensen; Pedro Range; Radhouane Ben-Hamadou; Steffen Sanvig Bach; Peter Rask Møller; Philip Francis Thomsen
Journal:  Conserv Biol       Date:  2019-12-24       Impact factor: 6.560

9.  Seasonal variability in the persistence of dissolved environmental DNA (eDNA) in a marine system: The role of microbial nutrient limitation.

Authors:  Ian Salter
Journal:  PLoS One       Date:  2018-02-23       Impact factor: 3.240

Review 10.  The Current State of Cephalopod Science and Perspectives on the Most Critical Challenges Ahead From Three Early-Career Researchers.

Authors:  Caitlin E O'Brien; Katina Roumbedakis; Inger E Winkelmann
Journal:  Front Physiol       Date:  2018-06-06       Impact factor: 4.566

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