Literature DB >> 28803482

Corynebacterium glutamicum Chassis C1*: Building and Testing a Novel Platform Host for Synthetic Biology and Industrial Biotechnology.

Meike Baumgart1, Simon Unthan2, Ramona Kloß2, Andreas Radek2, Tino Polen1, Niklas Tenhaef2, Moritz Fabian Müller2, Andreas Küberl1, Daniel Siebert3, Natalie Brühl4, Kay Marin5, Stephan Hans5, Reinhard Krämer4, Michael Bott1, Jörn Kalinowski6, Wolfgang Wiechert2,7, Gerd Seibold3, Julia Frunzke1, Christian Rückert6, Volker F Wendisch8, Stephan Noack2.   

Abstract

Targeted top-down strategies for genome reduction are considered to have a high potential for providing robust basic strains for synthetic biology and industrial biotechnology. Recently, we created a library of 26 genome-reduced strains of Corynebacterium glutamicum carrying broad deletions in single gene clusters and showing wild-type-like biological fitness. Here, we proceeded with combinatorial deletions of these irrelevant gene clusters in two parallel orders, and the resulting library of 28 strains was characterized under various environmental conditions. The final chassis strain C1* carries a genome reduction of 13.4% (412 deleted genes) and shows wild-type-like growth behavior in defined medium with d-glucose as carbon and energy source. Moreover, C1* proves to be robust against several stresses (including oxygen limitation) and shows long-term growth stability under defined and complex medium conditions. In addition to providing a novel prokaryotic chassis strain, our results comprise a large strain library and a revised genome annotation list, which will be valuable sources for future systemic studies of C. glutamicum.

Entities:  

Keywords:  C. glutamicum; RamA; chassis; genome reduction; synthetic biology; systems biology

Mesh:

Substances:

Year:  2017        PMID: 28803482     DOI: 10.1021/acssynbio.7b00261

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  18 in total

Review 1.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

2.  l-Serine Biosensor-Controlled Fermentative Production of l-Tryptophan Derivatives by Corynebacterium glutamicum.

Authors:  Lenny Ferrer; Mahmoud Elsaraf; Melanie Mindt; Volker F Wendisch
Journal:  Biology (Basel)       Date:  2022-05-13

3.  Homing endonuclease I-SceI-mediated Corynebacterium glutamicum ATCC 13032 genome engineering.

Authors:  Meng Wu; Yan Xu; Jun Yang; Guangdong Shang
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-07       Impact factor: 4.813

4.  Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens.

Authors:  Eugen Pfeifer; Slawomir Michniewski; Cornelia Gätgens; Eugenia Münch; Felix Müller; Tino Polen; Andrew Millard; Bastian Blombach; Julia Frunzke
Journal:  Appl Environ Microbiol       Date:  2019-08-14       Impact factor: 4.792

5.  Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletions.

Authors:  Theresa Zwiener; Marina Dziuba; Frank Mickoleit; Christian Rückert; Tobias Busche; Jörn Kalinowski; René Uebe; Dirk Schüler
Journal:  Microb Cell Fact       Date:  2021-02-04       Impact factor: 5.328

6.  Comprehensive Analysis of C. glutamicum Anaplerotic Deletion Mutants Under Defined d-Glucose Conditions.

Authors:  Jannick Kappelmann; Bianca Klein; Mathias Papenfuß; Julian Lange; Bastian Blombach; Ralf Takors; Wolfgang Wiechert; Tino Polen; Stephan Noack
Journal:  Front Bioeng Biotechnol       Date:  2021-01-20

7.  Physiological Response of Corynebacterium glutamicum to Indole.

Authors:  Tatjana Walter; Kareen H Veldmann; Susanne Götker; Tobias Busche; Christian Rückert; Arman Beyraghdar Kashkooli; Jannik Paulus; Katarina Cankar; Volker F Wendisch
Journal:  Microorganisms       Date:  2020-12-08

8.  Functional Characterization of a Small Alarmone Hydrolase in Corynebacterium glutamicum.

Authors:  Matthias Ruwe; Christian Rückert; Jörn Kalinowski; Marcus Persicke
Journal:  Front Microbiol       Date:  2018-05-09       Impact factor: 5.640

Review 9.  CRISPR-Cas9/Cas12a biotechnology and application in bacteria.

Authors:  Ruilian Yao; Di Liu; Xiao Jia; Yuan Zheng; Wei Liu; Yi Xiao
Journal:  Synth Syst Biotechnol       Date:  2018-10-03

10.  Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion.

Authors:  Johannes Hemmerich; Mohamed Labib; Carmen Steffens; Sebastian J Reich; Marc Weiske; Meike Baumgart; Christian Rückert; Matthias Ruwe; Daniel Siebert; Volker F Wendisch; Jörn Kalinowski; Wolfgang Wiechert; Marco Oldiges
Journal:  Microb Biotechnol       Date:  2020-09-06       Impact factor: 5.813

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