Literature DB >> 28800155

Epigenetic Analysis of SV40 Minichromosomes.

Lata Balakrishnan1, Barry Milavetz2.   

Abstract

Simian virus 40 (SV40) is one of the best-characterized members of the polyomavirus family of small DNA tumor viruses. It has a small genome of 5243 bp and utilizes cellular proteins for its molecular biology, with the exception of the T-antigen protein, which is coded by the virus and is involved in regulating transcription and directing replication. Importantly, SV40 exists as chromatin in both the virus particle and intracellular minichromosomes. These facts, combined with high yields of virus and minichromosomes following infection and ease of manipulation, have made SV40 an extremely useful model to study all aspects of eukaryotic molecular biology. This unit describes procedures for working with SV40 and preparing SV40 chromatin from infected cells and virus particles, as well as procedures for using SV40 chromatin to study epigenetic regulation. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  Simian virus 40 (SV40); chromatin immunoprecipitation; minichromosomes; next-generation sequencing; viral epigenetics

Mesh:

Year:  2017        PMID: 28800155      PMCID: PMC5672954          DOI: 10.1002/cpmc.35

Source DB:  PubMed          Journal:  Curr Protoc Microbiol        ISSN: 1934-8525


  37 in total

1.  Hyperacetylation and differential deacetylation of histones H4 and H3 define two distinct classes of acetylated SV40 chromosomes early in infection.

Authors:  Barry Milavetz
Journal:  Virology       Date:  2004-02-20       Impact factor: 3.616

2.  Programmed remodeling of hyperacetylated histone H4 and H3 organization on the SV40 genome during lytic infection.

Authors:  Lata Balakrishnan; Barry Milavetz
Journal:  Virology       Date:  2005-03-30       Impact factor: 3.616

3.  Histone hyperacetylation in the coding region of chromatin undergoing transcription in SV40 minichromosomes is a dynamic process regulated directly by the presence of RNA polymerase II.

Authors:  Lata Balakrishnan; Barry Milavetz
Journal:  J Mol Biol       Date:  2006-09-20       Impact factor: 5.469

4.  Isolation of a polyoma-nucleoprotein complex from infected mouse-cell cultures.

Authors:  M H Green; H I Miller; S Hendler
Journal:  Proc Natl Acad Sci U S A       Date:  1971-05       Impact factor: 11.205

5.  Selective extraction of polyoma DNA from infected mouse cell cultures.

Authors:  B Hirt
Journal:  J Mol Biol       Date:  1967-06-14       Impact factor: 5.469

6.  Action of micrococcal nuclease on chromatin and the location of histone H1.

Authors:  M Noll; R D Kornberg
Journal:  J Mol Biol       Date:  1977-01-25       Impact factor: 5.469

7.  Virion-mediated transfer of SV40 epigenetic information.

Authors:  Barry Milavetz; Les Kallestad; Amanda Gefroh; Nicholas Adams; Emily Woods; Lata Balakrishnan
Journal:  Epigenetics       Date:  2012-06-01       Impact factor: 4.528

8.  Nucleosome positioning in the regulatory region of SV40 chromatin correlates with the activation and repression of early and late transcription during infection.

Authors:  Meera Ajeet Kumar; Kendra Christensen; Benjamin Woods; Ashley Dettlaff; Danielle Perley; Adam Scheidegger; Lata Balakrishnan; Barry Milavetz
Journal:  Virology       Date:  2017-01-23       Impact factor: 3.616

9.  The structure of simian virus 40 refined at 3.1 A resolution.

Authors:  T Stehle; S J Gamblin; Y Yan; S C Harrison
Journal:  Structure       Date:  1996-02-15       Impact factor: 5.006

10.  Histone hyperacetylation during SV40 transcription is regulated by p300 and RNA polymerase II translocation.

Authors:  Lata Balakrishnan; Barry Milavetz
Journal:  J Mol Biol       Date:  2007-07-03       Impact factor: 5.469

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  2 in total

Review 1.  Epigenetic Regulation of Viral Biological Processes.

Authors:  Lata Balakrishnan; Barry Milavetz
Journal:  Viruses       Date:  2017-11-17       Impact factor: 5.048

2.  Comparing a new method for mapping nucleosomes in simian virus 40 chromatin to standard procedures.

Authors:  Barry Milavetz; Jacob Haugen; Kincaid Rowbotham
Journal:  Epigenetics       Date:  2020-08-30       Impact factor: 4.528

  2 in total

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