Literature DB >> 28799352

Free energy landscape and molecular pathways of gas hydrate nucleation.

Yuanfei Bi1, Anna Porras1, Tianshu Li1.   

Abstract

Despite the significance of gas hydrates in diverse areas, a quantitative knowledge of hydrate formation at a molecular level is missing. The impediment to acquiring this understanding is primarily attributed to the stochastic nature and ultra-fine scales of nucleation events, posing a great challenge for both experiment and simulation to explore hydrate nucleation. Here we employ advanced molecular simulation methods, including forward flux sampling (FFS), pB histogram analysis, and backward flux sampling, to overcome the limit of direct molecular simulation for exploring both the free energy landscape and molecular pathways of hydrate nucleation. First we test the half-cage order parameter (H-COP) which we developed for driving FFS, through conducting the pB histogram analysis. Our results indeed show that H-COP describes well the reaction coordinates of hydrate nucleation. Through the verified order parameter, we then directly compute the free energy landscape for hydrate nucleation by combining both forward and backward flux sampling. The calculated stationary distribution density, which is obtained independently of nucleation theory, is found to fit well against the classical nucleation theory (CNT). Subsequent analysis of the obtained large ensemble of hydrate nucleation trajectories show that although on average, hydrate formation is facilitated by a two-step like mechanism involving a gradual transition from an amorphous to a crystalline structure, there also exist nucleation pathways where hydrate crystallizes directly, without going through the amorphous stage. The CNT-like free energy profile and the structural diversity suggest the existence of multiple active transition pathways for hydrate nucleation, and possibly also imply the near degeneracy in their free energy profiles among different pathways. Our results thus bring a new perspective to the long standing question of how hydrates crystallize.

Entities:  

Year:  2016        PMID: 28799352     DOI: 10.1063/1.4961241

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Unraveling nucleation pathway in methane clathrate formation.

Authors:  Liwen Li; Jie Zhong; Youguo Yan; Jun Zhang; Jiafang Xu; Joseph S Francisco; Xiao Cheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-21       Impact factor: 11.205

2.  Pre-critical fluctuations and what they disclose about heterogeneous crystal nucleation.

Authors:  Martin Fitzner; Gabriele C Sosso; Fabio Pietrucci; Silvio Pipolo; Angelos Michaelides
Journal:  Nat Commun       Date:  2017-12-22       Impact factor: 14.919

3.  Double Life of Methanol: Experimental Studies and Nonequilibrium Molecular-Dynamics Simulation of Methanol Effects on Methane-Hydrate Nucleation.

Authors:  Marco Lauricella; Mohammad Reza Ghaani; Prithwish K Nandi; Simone Meloni; Bjorn Kvamme; Niall J English
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-03-24       Impact factor: 4.126

4.  Unbiased atomistic insight in the competing nucleation mechanisms of methane hydrates.

Authors:  Thom A Berendsen; Peter G Bolhuis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-09       Impact factor: 11.205

5.  Rate Prediction for Homogeneous Nucleation of Methane Hydrate at Moderate Supersaturation Using Transition Interface Sampling.

Authors:  A Arjun; P G Bolhuis
Journal:  J Phys Chem B       Date:  2020-09-08       Impact factor: 2.991

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.