Literature DB >> 28796277

Talking the talk, but not walking the walk: RT-qPCR as a paradigm for the lack of reproducibility in molecular research.

Stephen Bustin1, Tania Nolan2.   

Abstract

Poorly executed and inadequately reported molecular measurement methods are amongst the causes underlying the lack of reproducibility of much biomedical research. Although several high impact factor journals have acknowledged their past failure to scrutinise adequately the technical soundness of manuscripts, there is a perplexing reluctance to implement basic corrective measures. The reverse transcription real-time quantitative PCR (RT-qPCR) is probably the most straightforward measurement technique available for RNA quantification and is widely used in research, diagnostic, forensic and biotechnology applications. Despite the impact of the minimum information for the publication of quantitative PCR experiments (MIQE) guidelines, which aim to improve the robustness and the transparency of reporting of RT-qPCR data, we demonstrate that elementary protocol errors, inappropriate data analysis and inadequate reporting continue to be rife and conclude that the majority of published RT-qPCR data are likely to represent technical noise.
© 2017 Stichting European Society for Clinical Investigation Journal Foundation.

Keywords:  zzm321990qPCRzzm321990; Gene expression; quantification; reverse transcription

Mesh:

Substances:

Year:  2017        PMID: 28796277     DOI: 10.1111/eci.12801

Source DB:  PubMed          Journal:  Eur J Clin Invest        ISSN: 0014-2972            Impact factor:   4.686


  28 in total

1.  Selection of reference genes for quantitative PCR: identifying reference genes for airway epithelial cells exposed to Pseudomonas aeruginosa.

Authors:  Thomas H Hampton; Katja Koeppen; Laura Bashor; Bruce A Stanton
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2020-06-10       Impact factor: 5.464

2.  Upregulation of circular and linear METTL3 and USP3 in colorectal cancer.

Authors:  Bilal Alkhizzi; Mohammad Imran Khan; Ayat Al-Ghafari; Hani Choudhry
Journal:  Oncol Lett       Date:  2021-07-19       Impact factor: 3.111

Review 3.  qPCR primer design revisited.

Authors:  Stephen Bustin; Jim Huggett
Journal:  Biomol Detect Quantif       Date:  2017-11-22

Review 4.  While it is not deliberate, much of today's biomedical research contains logical and technical flaws, showing a need for corrective action.

Authors:  Yan He; Chengfu Yuan; Lichan Chen; Yanjie Liu; Haiyan Zhou; Ningzhi Xu; Dezhong Joshua Liao
Journal:  Int J Med Sci       Date:  2018-01-19       Impact factor: 3.738

5.  The price of progress: Funding and financing Alzheimer's disease drug development.

Authors:  Jeffrey Cummings; Carl Reiber; Parvesh Kumar
Journal:  Alzheimers Dement (N Y)       Date:  2018-06-13

6.  Improving the standardization of mRNA measurement by RT-qPCR.

Authors:  Rebecca Sanders; Stephen Bustin; Jim Huggett; Deborah Mason
Journal:  Biomol Detect Quantif       Date:  2018-03-16

7.  Blood-Based Biomarkers for Glioma in the Context of Gliomagenesis: A Systematic Review.

Authors:  Hamza Ali; Romée Harting; Ralph de Vries; Meedie Ali; Thomas Wurdinger; Myron G Best
Journal:  Front Oncol       Date:  2021-06-04       Impact factor: 6.244

Review 8.  Transcriptional-Readthrough RNAs Reflect the Phenomenon of "A Gene Contains Gene(s)" or "Gene(s) within a Gene" in the Human Genome, and Thus Are Not Chimeric RNAs.

Authors:  Yan He; Chengfu Yuan; Lichan Chen; Mingjuan Lei; Lucas Zellmer; Hai Huang; Dezhong Joshua Liao
Journal:  Genes (Basel)       Date:  2018-01-16       Impact factor: 4.096

Review 9.  Critical Evaluation of Gene Expression Changes in Human Tissues in Response to Supplementation with Dietary Bioactive Compounds: Moving Towards Better-Quality Studies.

Authors:  Biljana Pokimica; María-Teresa García-Conesa
Journal:  Nutrients       Date:  2018-06-22       Impact factor: 5.717

10.  Validation of reference genes for quantitative real-time PCR in tiger beetles across sexes, body parts, sexual maturity and immune challenge.

Authors:  Andrés García-Reina; María Juliana Rodríguez-García; José Galián
Journal:  Sci Rep       Date:  2018-07-16       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.