| Literature DB >> 28791159 |
Bonnie J Holmes1,2, Samuel M Williams1,2, Nicholas M Otway3, Einar E Nielsen1,4, Safia L Maher1,2, Mike B Bennett1, Jennifer R Ovenden1,2.
Abstract
Population genetic structure using nine polymorphic nuclear microsatellite loci was assessed for the tiger shark (Galeocerdo cuvier) at seven locations across the Indo-Pacific, and one location in the southern Atlantic. Genetic analyses revealed considerable genetic structuring (FST > 0.14, p < 0.001) between all Indo-Pacific locations and Brazil. By contrast, no significant genetic differences were observed between locations from within the Pacific or Indian Oceans, identifying an apparent large, single Indo-Pacific population. A lack of differentiation between tiger sharks sampled in Hawaii and other Indo-Pacific locations identified herein is in contrast to an earlier global tiger shark nDNA study. The results of our power analysis provide evidence to suggest that the larger sample sizes used here negated any weak population subdivision observed previously. These results further highlight the need for cross-jurisdictional efforts to manage the sustainable exploitation of large migratory sharks like G. cuvier.Entities:
Keywords: Galeocerdo cuvier; Indo-Pacific Ocean; microsatellite loci; population structure; tiger shark
Year: 2017 PMID: 28791159 PMCID: PMC5541554 DOI: 10.1098/rsos.170309
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
Figure 1.Sampling locations and number of G. cuvier tissue samples obtained from the Indo-East Indian (IEI, blue), the Central-West Pacific (CWP, black) and the Atlantic Ocean (BRA, red). Pink open circle denotes the Torres Strait land bridge.
Figure 2.Length-frequency distribution of G. cuvier from which tissues were sampled in the Indo-Pacific region. No length measurements were recorded for Coral Sea samples.
Microsatellite marker diversity described by number of alleles (Na), number of effective alleles (Ne), observed (Ho) and expected heterozygosity (He), and inbreeding coefficient (Fis). n = number of individuals. Note that n in combined columns differs to total as not all loci could be genotyped per individual.
| Tgr_1033 | Tgr_1157 | Tgr_1185 | Tgr_212 | Tgr_233 | Tgr_348 | Tgr_47 | Tgr_891 | Tgr_943 | ||
|---|---|---|---|---|---|---|---|---|---|---|
| QLD | 4 | 10 | 6 | 3 | 24 | 18 | 5 | 19 | 11 | |
| ( | 1.964 | 6.283 | 3.582 | 1.646 | 7.081 | 9.338 | 1.808 | 12.253 | 8.056 | |
| 0.441 | 0.750 | 0.706 | 0.348 | 0.912 | 0.924 | 0.485 | 0.939 | 0.853 | ||
| 0.491 | 0.841 | 0.721 | 0.392 | 0.859 | 0.893 | 0.447 | 0.918 | 0.876 | ||
| 0.101 | 0.108 | 0.021 | 0.114 | −0.062 | −0.035 | −0.086 | −0.023 | 0.026 | ||
| NSW | 5 | 10 | 5 | 3 | 26 | 21 | 3 | 17 | 13 | |
| ( | 2.275 | 5.717 | 3.125 | 1.391 | 7.772 | 12.189 | 1.547 | 11.685 | 8.258 | |
| 0.560 | 0.825 | 0.680 | 0.281 | 0.871 | 0.918 | 0.354 | 0.914 | 0.879 | ||
| 0.605 | 0.838 | 0.738 | 0.309 | 0.888 | 0.911 | 0.300 | 0.901 | 0.877 | ||
| −0.080 | −0.015 | −0.085 | −0.098 | −0.019 | 0.007 | 0.151 | 0.014 | 0.003 | ||
| COR | 4 | 9 | 5 | 3 | 18 | 16 | 3 | 15 | 13 | |
| ( | 2.185 | 6.234 | 3.871 | 1.536 | 6.863 | 9.138 | 1.885 | 11.187 | 9.554 | |
| 0.556 | 0.800 | 0.781 | 0.361 | 0.886 | 0.912 | 0.417 | 0.943 | 0.853 | ||
| 0.542 | 0.840 | 0.742 | 0.349 | 0.854 | 0.891 | 0.470 | 0.911 | 0.895 | ||
| −0.024 | 0.047 | −0.053 | −0.034 | −0.037 | −0.024 | 0.113 | −0.035 | 0.047 | ||
| NT | 4 | 10 | 6 | 3 | 24 | 21 | 4 | 17 | 12 | |
| ( | 1.858 | 3.883 | 3.834 | 1.418 | 7.586 | 10.030 | 1.659 | 12.160 | 7.742 | |
| 0.452 | 0.758 | 0.661 | 0.306 | 0.836 | 0.869 | 0.344 | 0.967 | 0.952 | ||
| 0.462 | 0.742 | 0.739 | 0.295 | 0.868 | 0.900 | 0.397 | 0.918 | 0.871 | ||
| 0.022 | −0.021 | 0.105 | −0.039 | 0.037 | 0.035 | 0.133 | −0.054 | −0.093 | ||
| BRA | 3 | 5 | 4 | 2 | 9 | 9 | 2 | 12 | 8 | |
| ( | 2.510 | 3.122 | 3.048 | 1.508 | 7.538 | 7.538 | 1.753 | 9.846 | 7.000 | |
| 0.625 | 0.750 | 0.875 | 0.429 | 0.857 | 1.000 | 0.625 | 0.875 | 1.000 | ||
| 0.602 | 0.680 | 0.672 | 0.337 | 0.867 | 0.867 | 0.430 | 0.898 | 0.857 | ||
| −0.039 | −0.103 | −0.302 | −0.273 | 0.012 | −0.153 | −0.455 | 0.026 | −0.167 | ||
| NCL | 4 | 8 | 6 | 3 | 15 | 15 | 3 | 13 | 10 | |
| ( | 1.699 | 4.500 | 3.868 | 1.340 | 7.056 | 8.647 | 2.066 | 10.127 | 7.670 | |
| 0.400 | 0.810 | 0.810 | 0.286 | 0.952 | 0.857 | 0.476 | 0.850 | 0.952 | ||
| 0.411 | 0.778 | 0.741 | 0.254 | 0.858 | 0.884 | 0.516 | 0.901 | 0.870 | ||
| 0.027 | −0.041 | −0.092 | −0.125 | −0.110 | 0.031 | 0.077 | 0.057 | −0.095 | ||
| WA | 5 | 9 | 6 | 4 | 22 | 19 | 3 | 17 | 12 | |
| ( | 2.047 | 4.938 | 3.269 | 1.524 | 8.267 | 11.521 | 1.863 | 12.398 | 6.938 | |
| 0.526 | 0.807 | 0.649 | 0.298 | 0.930 | 0.895 | 0.439 | 0.982 | 0.839 | ||
| 0.512 | 0.797 | 0.694 | 0.344 | 0.879 | 0.913 | 0.463 | 0.919 | 0.856 | ||
| −0.029 | −0.012 | 0.065 | 0.133 | −0.058 | 0.020 | 0.053 | −0.068 | 0.019 | ||
| HAW | 7 | 10 | 4 | 3 | 14 | 13 | 4 | 15 | 12 | |
| ( | 1.869 | 5.765 | 3.139 | 1.156 | 5.345 | 9.660 | 2.353 | 11.025 | 8.791 | |
| 0.571 | 0.667 | 0.579 | 0.095 | 0.619 | 0.938 | 0.550 | 0.905 | 0.950 | ||
| 0.465 | 0.827 | 0.681 | 0.135 | 0.813 | 0.896 | 0.575 | 0.909 | 0.886 | ||
| −0.229 | 0.193 | 0.150 | 0.294 | 0.238 | −0.046 | 0.043 | 0.005 | −0.072 | ||
| Combined | 353 | 352 | 347 | 354 | 350 | 341 | 351 | 347 | 349 | |
| ( | 4.500 | 8.875 | 5.250 | 3.000 | 19.000 | 16.500 | 3.375 | 15.625 | 11.375 | |
| −0.032 | 0.024 | −0.023 | −0.019 | −0.001 | −0.020 | 0.004 | −0.010 | −0.041 |
Pairwise FST values (above diagonal) and Dest values (below diagonal) for G. cuvier across eight sampling locations. Significant results were accepted at p < 0.01 and denoted by *, with p-value listed in parentheses.
| QLD | NSW | COR | NT | NCL | WA | HAW | BRA | |
|---|---|---|---|---|---|---|---|---|
| QLD | — | −0.001 | −0.008 | −0.002 | 0.003 | 0.003 | 0.001 | 0.146* |
| (0.820) | (0.766) | (0.891) | (0.216) | (0.054) | (0.405) | (0.000) | ||
| NSW | −0.003 | — | −0.003 | 0.000 | 0.003 | 0.003 | −0.004 | 0.152* |
| (0.808) | (0.891) | (0.487) | (0.261) | (0.036) | (0.847) | (0.000) | ||
| COR | −0.003 | −0.007 | — | 0.002 | 0.002 | 0.000 | 0.001 | 0.167* |
| (0.631) | (0.926) | (0.225) | (0.252) | (0.451) | (0.559) | (0.000) | ||
| NT | −0.006 | −0.001 | 0.003 | — | 0.004 | 0.002 | 0.000 | 0.143* |
| (0.944) | (0.644) | (0.306) | (0.162) | (0.190) | (0.541) | (0.000) | ||
| NCL | 0.005 | 0.005 | 0.001 | 0.006 | — | 0.000 | 0.001 | 0.167* |
| (0.276) | (0.237) | (0.457) | (0.218) | (0.423) | (0.441) | (0.000) | ||
| WA | 0.007 | 0.007 | −0.001 | 0.003 | 0.001 | — | −0.001 | 0.151* |
| (0.076) | (0.053) | (0.529) | (0.243) | (0.437) | (0.514) | (0.000) | ||
| HAW | 0.002 | −0.008 | 0.000 | −0.002 | 0.000 | −0.001 | — | 0.157* |
| (0.396) | (0.873) | (0.436) | (0.561) | (0.434) | (0.507) | (0.000) | ||
| BRA | 0.321* | 0.32* | 0.336* | 0.319* | 0.331* | 0.315* | 0.298* | — |
| (0.001) | (0.001) | (0.001) | (0.001) | (0.001) | (0.001) | (0.001) |
Pairwise FST values (above diagonal) and Dest values (below diagonal) for G. cuvier across three grouped sampling locations. Significant results were accepted at p < 0.01 and denoted by *, with p-value listed in parentheses.
| Central-West Pacific | Indo-East Indian | Atlantic | |
|---|---|---|---|
| Central-West Pacific | — | 0.000 (0.135) | 0.151* (0.000) |
| Indo-East Indian | 0.002 (0.192) | — | 0.145* (0.000) |
| Atlantic | 0.321* (0.001) | 0.317* (0.001) | — |