| Literature DB >> 28787807 |
Helena Pereira1, António José Alves Santos2, Ofélia Anjos3,4.
Abstract
In this paper, the morphological properties of fiber length (weighted in length) and of fiber width of unbleached Kraft pulp of Acacia melanoxylon were determined using TECHPAP Morfi® equipment (Techpap SAS, Grenoble, France), and were used in the calibration development of Near Infrared (NIR) partial least squares regression (PLS-R) models based on the spectral data obtained for the wood. It is the first time that fiber length and width of pulp were predicted with NIR spectral data of the initial woodmeal, with high accuracy and precision, and with ratios of performance to deviation (RPD) fulfilling the requirements for screening in breeding programs. The selected models for fiber length and fiber width used the second derivative and first derivative + multiplicative scatter correction (2ndDer and 1stDer + MSC) pre-processed spectra, respectively, in the wavenumber ranges from 7506 to 5440 cm-1. The statistical parameters of cross-validation (RMSECV (root mean square error of cross-validation) of 0.009 mm and 0.39 μm) and validation (RMSEP (root mean square error of prediction) of 0.007 mm and 0.36 μm) with RPDTS (ratios of performance to deviation of test set) values of 3.9 and 3.3, respectively, confirmed that the models are robust and well qualified for prediction. This modeling approach shows a high potential to be used for tree breeding and improvement programs, providing a rapid screening for desired fiber morphological properties of pulp prediction.Entities:
Keywords: Acacia melanoxylon; Kraft pulps; NIR; fibre length and width
Year: 2015 PMID: 28787807 PMCID: PMC5456576 DOI: 10.3390/ma9010008
Source DB: PubMed Journal: Materials (Basel) ISSN: 1996-1944 Impact factor: 3.623
Number of samples and range of fibre length (weighted in length) and width in the calibration set and test set, with average, standard deviation (SD) and coefficient of variation (CV).
| Parameter | Fiber Length (mm) | Fiber Width (μm) | ||
|---|---|---|---|---|
| Calibration Set | Test Set | Calibration Set | Test Set | |
| Number of samples | 45 | 15 | 45 | 15 |
| Maximum | 0.79 | 0.79 | 22.3 | 21.6 |
| Minimum | 0.66 | 0.69 | 16.4 | 16.7 |
| Average | 0.73 | 0.73 | 18.7 | 18.9 |
| SD | 0.03 | 0.03 | 1.4 | 1.2 |
| CV | 4.0 | 3.7 | 6.4 | 5.6 |
Results of the cross-validation of the calibration set (45 samples) and of the test set validation (15 samples) including percentage of outsiders (OS) and outliers (OL) of the test set obtained during prediction of the samples with unknown fiber length (weighted in length) and width, using various pre-processing methods of the raw spectral data. In bold: cross-validation for the best model with test set validation.
| Parameter | Pre-Processing | Number of Samples | Cross-Validation (CV) | Test Set Validation (TS) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rank | RMSECV | RPD | Rank | RMSEP | RPD | OS (%) | OL (%) | |||||
| Fiber Length (mm) | 1stDer | 45 | 9 | 92.4 | 0.008 | 3.6 | 8 | 87.8 | 0.010 | 2.9 | 0.0 | 0.0 |
| ConOff | 44 | 10 | 90.6 | 0.009 | 3.3 | 9 | 76.9 | 0.014 | 2.2 | 0.0 | 0.0 | |
| MinMax | 45 | 9 | 80.2 | 0.014 | 2.3 | 8 | 76.6 | 0.014 | 2.1 | 0.0 | 0.0 | |
| MSC | 45 | 9 | 81.7 | 0.013 | 2.3 | 7 | 70.9 | 0.015 | 1.9 | 0.0 | 0.0 | |
| None | 42 | 10 | 88.5 | 0.010 | 3.0 | 9 | 62.4 | 0.017 | 1.8 | 0.0 | 0.0 | |
| SLS | 45 | 9 | 91.7 | 0.009 | 3.5 | 7 | 80.1 | 0.013 | 2.3 | 0.0 | 0.0 | |
| VecNor | 45 | 9 | 81.6 | 0.013 | 2.3 | 7 | 70.7 | 0.015 | 1.9 | 0.0 | 0.0 | |
| 1stDer + MSC | 44 | 8 | 86.5 | 0.011 | 2.7 | 6 | 76.4 | 0.014 | 2.1 | 0.0 | 0.0 | |
| 1stDer + SLS | 45 | 9 | 93.4 | 0.008 | 3.9 | 7 | 88.9 | 0.009 | 3.0 | 0.0 | 0.0 | |
| 1stDer + VecNor | 44 | 8 | 86.4 | 0.011 | 2.7 | 6 | 76.4 | 0.014 | 2.1 | 0.0 | 0.0 | |
| Fiber Width (μm) | 1stDer | 45 | 7 | 91.8 | 0.41 | 3.5 | 6 | 85.0 | 0.45 | 2.6 | 0.0 | 0.0 |
| 2ndDer | 44 | 7 | 88.5 | 0.45 | 3.0 | 9 | 93.7 | 0.29 | 4.0 | 0.0 | 0.0 | |
| ConOff | 45 | 9 | 92.6 | 0.38 | 3.7 | 8 | 71.1 | 0.62 | 1.9 | 0.0 | 0.0 | |
| MinMax | 45 | 8 | 92.5 | 0.39 | 3.7 | 7 | 75.1 | 0.58 | 2.0 | 0.0 | 0.0 | |
| MSC | 45 | 8 | 93.0 | 0.37 | 3.8 | 6 | 75.0 | 0.58 | 2.0 | 0.0 | 0.0 | |
| None | 45 | 10 | 92.6 | 0.38 | 3.7 | 5 | 75.7 | 0.51 | 2.1 | 0.0 | 0.1 | |
| SLS | 45 | 8 | 92.5 | 0.37 | 3.7 | 7 | 72.3 | 0.61 | 1.9 | 0.0 | 0.0 | |
| VecNor | 45 | 8 | 93.0 | 0.37 | 3.8 | 6 | 74.7 | 0.58 | 2.0 | 0.0 | 0.0 | |
| 1stDer + SLS | 44 | 7 | 90.2 | 0.41 | 3.2 | 7 | 88.2 | 0.40 | 2.9 | 0.0 | 0.0 | |
| 1stDer + VecNor | 45 | 6 | 92.5 | 0.39 | 3.7 | 6 | 87.6 | 0.41 | 2.9 | 0.0 | 0.0 | |
Rank—number of PLS components; r2—coefficient of determination; RMSECV—root mean square error of cross-validation; RPD—ratios of performance to deviation; RMSEP—root mean square error of prediction; 1stDer—first derivative; 2ndDer—seconded derivative; ConOff—constant offset elimination; MinMax—minimum-maximum normalization; MSC—multiplicative scatter correction; None—no spectral data processing; SLS—straight line elimination; VecNor—vector normalization; 1stDer + MSC—first derivative + multiplicative scatter correction; 1stDer + SLS—first derivative + straight line subtraction; 1stDer + VecNor—first derivative + vector normalization.
Wavenumber ranges and pre-processing used in the NIR-PLS-R (infrared (NIR) partial least squares regression (PLSR) models published in bibliography for different properties of Acacia melanoxylon.
| Property | References | Material | Wavenumber Ranges (cm−1) | Pre-Processing |
|---|---|---|---|---|
| Wood basic density | [ | Solid wood | 8250–7494 + 5450–5304 | 1stDer + SLS |
| Pulp yield | [ | Woodmeal | 9087–5440 + 4605–4243 | 2ndDer |
| Kappa number | [ | Kraft pulp | 6110–5440 | 1stDer |
| ISO brightness of unbleached pulp | [ | 9404–7498 + 4605–4243 | 1stDer |
Figure 1NIR-PLS-R predicted versus laboratory determined fiber length and fiber width for Acacia melanoxylon pulps for the cross-validation (a,c) and test set validation (b,d).
Figure 2NIR diffuse reflectance for all spectra (45 samples—cross-validation) of the fiber length and fiber width for Acacia melanoxylon pulps (a,b, respectively).
Results of the calibration and cross-validation for all samples (60 samples) for fiber length (weighted in length) and width of Acacia melanoxylon pulps, using the best pre-processing methods of the raw spectral data.
| Parameter | Pre-Processing | Calibration (C) | Cross-Validation (CV) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Rank | RMSEE | RPD | Rank | RMSECV | RPD | ||||
| Fiber length (mm) | 2ndDer | 8 | 96.5 | 0.006 | 5.3 | 8 | 94.0 | 0.007 | 4.1 |
| Fiber width (μm) | 1stDer + MSC | 6 | 95.0 | 0.32 | 4.5 | 6 | 92.8 | 0.37 | 3.7 |
Rank—number of PLS components; r2—coefficient of determination; RMSECV—root mean square error of cross validation; RPD—ratios of performance to deviation; RMSEE—root mean square error of estimation; 2ndDer—seconded derivative; 1stDer + MSC—first derivative + multiplicative scatter correction.
Model characteristics for some cellular morphological properties of wood using NIR spectroscopy published in the bibliography.
| Species | Reference | Parameter | Pre-Processing | Rank | RMSECV | RMSEP | |
|---|---|---|---|---|---|---|---|
| [ | Fiber length (mm) | MSC | 6 | 87.0/93.0 | 0.018 mm | 0.012 mm | |
| [ | Tracheid radial diameter (μm) | 1stDer (a) | 10 | 46.0/42.0 | 1.58 * μm | 1.77 ** μm | |
| 1stDer (b) | 10 | 45.0/46.0 | 1.59 * μm | 1.60 ** μm | |||
| Tracheid tangential diameter (μm) | 1stDer (a) | 6 | 60.0/63.0 | 1.00 * μm | 1.09 ** μm | ||
| 1stDer (b) | 6 | 60.0/62.0 | 1.02 * μm | 1.04 ** μm | |||
| [ | Tracheid radial diameter (μm) | 2ndDer (c) | 6 | 70.0/36.0 | 1.10 * μm | 1.50 ** μm | |
| Tracheid tangential diameter (μm) | 6 | 80.0/61.0 | 0.60 * μm | 1.30 ** μm | |||
| Tracheid radial diameter (μm) | 2ndDer (d) | 5 | 59.0/16.0 | 1.30 * μm | 1.70 ** μm | ||
| Tracheid tangential diameter (μm) | 4 | 73.0/16.0 | 0.70 * μm | 1.70 ** μm | |||
| [ | Tracheid radial diameter (μm) | 2ndDer | 6 | 65.0/28.0–30.0 | 1.60 * μm | 1.90–2.70 ** μm | |
| Tracheid tangential diameter (μm) | 4 | 69.0/69.0–79.0 | 1.00 * μm | 1.20–1.70 ** μm |
(a) original calibration; (b) original calibration with new data; (c) spectra on radial-longitudinal face of wood samples; (d) spectra on the transverse face of dry wood samples; * value corresponding to standard error of calibration (SEC); ** value corresponding to standard error of prediction (SEP).