Literature DB >> 28787008

Correction: Whole-Genome Saliva and Blood DNA Methylation Profiling in Individuals with a Respiratory Allergy.

Sabine A S Langie, Katarzyna Szarc Vel Szic, Ken Declerck, Sophie Traen, Gudrun Koppen, Guy Van Camp, Greet Schoeters, Wim Vanden Berghe, Patrick De Boever.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0151109.].

Entities:  

Year:  2017        PMID: 28787008      PMCID: PMC5546635          DOI: 10.1371/journal.pone.0183088

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


There is a typographical error in Table 2. Table 2 reports averaged values of multiple CpG sites in the reported gene regions instead of the average of the single CpG site corresponding to the validated cg-probes. For instance, for cg19754622 in the STK32C gene region (S1 Dataset), the authors reported the average of the 6 CpG sites that were analyzed along with the CpG-site of interest (cg19754622 = CpG1). A similar switch of data for the other two gene regions is also present.
Table 2

Comparison of methylation differences between RA cases and controls in PBMC and saliva as assessed by Illumina 450K bead chips and bisulfite pyrosequencing.

Assaycg-probegeneBlood PBMCSaliva
Mean β (%) ±SDΔβ (%)Mean β (%) ±SDΔβ (%)
RA casesControlsRA casesControls
450K1cg19754622STK32C52.39 ± 5.372.17 ± 21.0-19.78*30.62 ± 13.064.82 ± 28.5-34.21*
cg08899523FGFR245.15 ± 10.558.47 ± 9.5-13.32*39.52 ± 15.259.81 ± 9.5-20.30*
cg11965913PM20D155.24 ± 36.618.65 ± 17.636.58*62.63 ± 33.721.69 ± 20.440.94*
pyroseq.2cg19754622STK32C52.00 ± 9.872.00 ± 18.6-20.0025.20 ± 14.661.20 ± 27.8-36.00*
cg08899523FGFR239.80 ± 9.053.27 ± 11.4-13.4731.20 ± 14.951.60 ± 13.2-20.40^
cg11965913PM20D159.00 ± 32.625.20 ± 24.333.8064.70 ± 33.924.80 ± 21.539.90*

Statistics were performed: 1using M-values with Limma package, or 2Mann-Witney U test to study differences between RA cases and controls (*P≤0.05; ^P<0.1).

Statistics were performed: 1using M-values with Limma package, or 2Mann-Witney U test to study differences between RA cases and controls (*P≤0.05; ^P<0.1). The statistical analyses were performed with the correct values, so this error does not affect the results or conclusions of this study. Please see the corrected Table 2 here.

Pyrosequencing Data.

(XLSX) Click here for additional data file.
  1 in total

1.  Whole-Genome Saliva and Blood DNA Methylation Profiling in Individuals with a Respiratory Allergy.

Authors:  Sabine A S Langie; Katarzyna Szarc Vel Szic; Ken Declerck; Sophie Traen; Gudrun Koppen; Guy Van Camp; Greet Schoeters; Wim Vanden Berghe; Patrick De Boever
Journal:  PLoS One       Date:  2016-03-21       Impact factor: 3.240

  1 in total
  2 in total

1.  DNA methylation analysis from saliva samples for epidemiological studies.

Authors:  Shota Nishitani; Sasha E Parets; Brian W Haas; Alicia K Smith
Journal:  Epigenetics       Date:  2018-08-01       Impact factor: 4.528

2.  Characterization of methylation patterns associated with lifestyle factors and vitamin D supplementation in a healthy elderly cohort from Southwest Sweden.

Authors:  Maria Araceli Diaz Cruz; Benjamin Ulfenborg; Peter Blomstrand; Maria Faresjö; Fredrik Ståhl; Sandra Karlsson
Journal:  Sci Rep       Date:  2022-07-25       Impact factor: 4.996

  2 in total

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