| Literature DB >> 28787008 |
Sabine A S Langie, Katarzyna Szarc Vel Szic, Ken Declerck, Sophie Traen, Gudrun Koppen, Guy Van Camp, Greet Schoeters, Wim Vanden Berghe, Patrick De Boever.
Abstract
[This corrects the article DOI: 10.1371/journal.pone.0151109.].Entities:
Year: 2017 PMID: 28787008 PMCID: PMC5546635 DOI: 10.1371/journal.pone.0183088
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Comparison of methylation differences between RA cases and controls in PBMC and saliva as assessed by Illumina 450K bead chips and bisulfite pyrosequencing.
| Assay | cg-probe | gene | Blood PBMC | Saliva | ||||
|---|---|---|---|---|---|---|---|---|
| Mean β (%) ±SD | Δβ (%) | Mean β (%) ±SD | Δβ (%) | |||||
| RA cases | Controls | RA cases | Controls | |||||
| 450K1 | cg19754622 | STK32C | 52.39 ± 5.3 | 72.17 ± 21.0 | -19.78* | 30.62 ± 13.0 | 64.82 ± 28.5 | -34.21* |
| cg08899523 | FGFR2 | 45.15 ± 10.5 | 58.47 ± 9.5 | -13.32* | 39.52 ± 15.2 | 59.81 ± 9.5 | -20.30* | |
| cg11965913 | PM20D1 | 55.24 ± 36.6 | 18.65 ± 17.6 | 36.58* | 62.63 ± 33.7 | 21.69 ± 20.4 | 40.94* | |
| pyroseq.2 | cg19754622 | STK32C | 52.00 ± 9.8 | 72.00 ± 18.6 | -20.00 | 25.20 ± 14.6 | 61.20 ± 27.8 | -36.00* |
| cg08899523 | FGFR2 | 39.80 ± 9.0 | 53.27 ± 11.4 | -13.47 | 31.20 ± 14.9 | 51.60 ± 13.2 | -20.40^ | |
| cg11965913 | PM20D1 | 59.00 ± 32.6 | 25.20 ± 24.3 | 33.80 | 64.70 ± 33.9 | 24.80 ± 21.5 | 39.90* | |
Statistics were performed: 1using M-values with Limma package, or 2Mann-Witney U test to study differences between RA cases and controls (*P≤0.05; ^P<0.1).