Literature DB >> 28782612

Impact of the removal of N-terminal non-structured amino acids on activity and stability of xylanases from Orpinomyces sp. PC-2.

Rafaela Zandonade Ventorim1, Tiago Antônio de Oliveira Mendes2, Larissa Mattos Trevizano1, Ana Maria Dos Santos Camargos1, Valéria Monteze Guimarães3.   

Abstract

Xylanases catalyze the random hydrolysis of xylan backbone from plant biomass and thus, they have application in the production of biofuels, Kraft pulps biobleaching and feed industry. Here, xylanases derived from Orpinomyces sp. PC-2 were engineered guided by molecular dynamics methods to obtain more thermostable enzymes. Based on these models, 27 amino acid residues from the N-terminal were predicted to reduce protein stability and the impact of this removal was validated to two enzyme constructs: small xylanase Wild-Type (SWT) obtained from Wild-Type xylanase (WT) and small xylanase Mutant (SM2) generated from M2 mutant xylanase (V135A, A226T). The tail removal promoted increase in specific activity of purified SWT and SM2, which achieved 5,801.7 and 5,106.8Umg-1 of protein, respectively, while the WT activity was 444.1Umg-1 of protein. WT, SWT and SM2 showed half-life values at 50°C of 0.8, 2.3 and 29.5h, respectively. Overall, in view of the results, we propose that the presence of non-structured amino acid in the N-terminal leads to destabilization of the xylanases and may promote less access of the substrate to the active site. Therefore, its removal may promote increased stability and enzymatic activity, interesting properties that make them suitable for biotechnological applications.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Molecular dynamics simulation; Orpinomyces; Thermostability; Xylanase

Mesh:

Substances:

Year:  2017        PMID: 28782612     DOI: 10.1016/j.ijbiomac.2017.08.015

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  4 in total

Review 1.  Engineering Thermostable Microbial Xylanases Toward its Industrial Applications.

Authors:  Vishal Kumar; Arun Kumar Dangi; Pratyoosh Shukla
Journal:  Mol Biotechnol       Date:  2018-03       Impact factor: 2.695

Review 2.  Genetically Engineered Proteins to Improve Biomass Conversion: New Advances and Challenges for Tailoring Biocatalysts.

Authors:  Lucas Ferreira Ribeiro; Vanesa Amarelle; Luana de Fátima Alves; Guilherme Marcelino Viana de Siqueira; Gabriel Lencioni Lovate; Tiago Cabral Borelli; María-Eugenia Guazzaroni
Journal:  Molecules       Date:  2019-08-08       Impact factor: 4.411

3.  The Emergence of New Catalytic Abilities in an Endoxylanase from Family GH10 by Removing an Intrinsically Disordered Region.

Authors:  Carlos Gil-Durán; Romina V Sepúlveda; Maximiliano Rojas; Víctor Castro-Fernández; Victoria Guixé; Inmaculada Vaca; Gloria Levicán; Fernando D González-Nilo; María-Cristina Ravanal; Renato Chávez
Journal:  Int J Mol Sci       Date:  2022-02-19       Impact factor: 5.923

4.  Insight into the functional roles of Glu175 in the hyperthermostable xylanase XYL10C-ΔN through structural analysis and site-saturation mutagenesis.

Authors:  Shuai You; Chun-Chi Chen; Tao Tu; Xiaoyu Wang; Rui Ma; Hui-Yi Cai; Rey-Ting Guo; Hui-Ying Luo; Bin Yao
Journal:  Biotechnol Biofuels       Date:  2018-06-08       Impact factor: 6.040

  4 in total

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