Literature DB >> 28780753

Analysis of biological functional networks during sciatic nerve repair and regeneration.

Meiling Lu1, Qiong Cheng2, Zijian Fang1, Sheng Yi3.   

Abstract

Peripheral nerve injury is a common disease with a low recovery rate. A better understanding of the molecular changes underlying peripheral nerve injury and regeneration may contribute to the development of novel therapies for the treatment of peripheral nerve injury. In the current study, we analyzed differentially expressed genes in rat sciatic nerve stumps at 1, 4, 7, and 14 days post nerve crush and built biological functional networks at each time point. Our outcomes suggested that "Neurological Disease" involved networks were significant at 1 day post nerve crush, "Cellular Assembly and Organization" involved networks were important at 4 and 7 days post nerve crush, while "Tissue Morphology" involved networks were important at 14 days post nerve crush. We also investigated the temporal expression patterns as well as central genes of these critical networks. Taken together, our study revealed genetic networks and gene-gene interactions in the injured nerve stumps and thus might enhance our understanding of peripheral nerve regeneration.

Entities:  

Keywords:  Bioinformatic analysis; Ingenuity pathway analysis; Peripheral nerve regeneration; RNA sequencing; Sciatic nerve crush

Mesh:

Substances:

Year:  2017        PMID: 28780753     DOI: 10.1007/s11010-017-3143-5

Source DB:  PubMed          Journal:  Mol Cell Biochem        ISSN: 0300-8177            Impact factor:   3.396


  20 in total

1.  DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Authors:  Glynn Dennis; Brad T Sherman; Douglas A Hosack; Jun Yang; Wei Gao; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-04-03       Impact factor: 13.583

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Authors:  Weixiang Liu; Kehong Yuan; Datian Ye
Journal:  J Biomed Inform       Date:  2007-12-23       Impact factor: 6.317

Review 3.  Clustering approaches to identifying gene expression patterns from DNA microarray data.

Authors:  Jin Hwan Do; Dong-Kug Choi
Journal:  Mol Cells       Date:  2008-03-31       Impact factor: 5.034

4.  Identification and functional annotation of novel microRNAs in the proximal sciatic nerve after sciatic nerve transection.

Authors:  Shiying Li; Bin Yu; Yongjun Wang; Dengbing Yao; Zhanhu Zhang; Xiaosong Gu
Journal:  Sci China Life Sci       Date:  2011-09-16       Impact factor: 6.038

Review 5.  Improving peripheral nerve regeneration: from molecular mechanisms to potential therapeutic targets.

Authors:  K Ming Chan; Tessa Gordon; Douglas W Zochodne; Hollie A Power
Journal:  Exp Neurol       Date:  2014-09-16       Impact factor: 5.330

6.  Macrophage recruitment in different models of nerve injury: lysozyme as a marker for active phagocytosis.

Authors:  R D Venezie; A D Toews; P Morell
Journal:  J Neurosci Res       Date:  1995-01-01       Impact factor: 4.164

7.  Monocyte chemoattractant protein 1 is responsible for macrophage recruitment following injury to sciatic nerve.

Authors:  A D Toews; C Barrett; P Morell
Journal:  J Neurosci Res       Date:  1998-07-15       Impact factor: 4.164

8.  Gene network interconnectedness and the generalized topological overlap measure.

Authors:  Andy M Yip; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2007-01-24       Impact factor: 3.169

9.  Deep Sequencing and Bioinformatic Analysis of Lesioned Sciatic Nerves after Crush Injury.

Authors:  Sheng Yi; Honghong Zhang; Leilei Gong; Jiancheng Wu; Guangbin Zha; Songlin Zhou; Xiaosong Gu; Bin Yu
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

10.  Ingenuity Pathway Analysis of Gene Expression Profiles in Distal Nerve Stump following Nerve Injury: Insights into Wallerian Degeneration.

Authors:  Jun Yu; Xiaosong Gu; Sheng Yi
Journal:  Front Cell Neurosci       Date:  2016-12-06       Impact factor: 5.505

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