Literature DB >> 28780377

Gene selection for tumor classification using a novel bio-inspired multi-objective approach.

M Dashtban1, Mohammadali Balafar2, Prashanth Suravajhala3.   

Abstract

Identifying the informative genes has always been a major step in microarray data analysis. The complexity of various cancer datasets makes this issue still challenging. In this paper, a novel Bio-inspired Multi-objective algorithm is proposed for gene selection in microarray data classification specifically in the binary domain of feature selection. The presented method extends the traditional Bat Algorithm with refined formulations, effective multi-objective operators, and novel local search strategies employing social learning concepts in designing random walks. A hybrid model using the Fisher criterion is then applied to three widely-used microarray cancer datasets to explore significant biomarkers which reveal the effectiveness of the proposed method for genomic analysis. Experimental results unveil new combinations of informative biomarkers have association with other studies.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bat algorithm; Cancer classification; Evolutionary algorithms; Feature selection; Gene selection; Microarray data analysis

Mesh:

Substances:

Year:  2017        PMID: 28780377     DOI: 10.1016/j.ygeno.2017.07.010

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  12 in total

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Authors:  Leila Mirsadeghi; Reza Haji Hosseini; Ali Mohammad Banaei-Moghaddam; Kaveh Kavousi
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2.  Gene Selection via a New Hybrid Ant Colony Optimization Algorithm for Cancer Classification in High-Dimensional Data.

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3.  MapReduce-Based Parallel Genetic Algorithm for CpG-Site Selection in Age Prediction.

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Journal:  Genes (Basel)       Date:  2019-11-25       Impact factor: 4.096

4.  Evolutionary Optimization of Ensemble Learning to Determine Sentiment Polarity in an Unbalanced Multiclass Corpus.

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Journal:  Entropy (Basel)       Date:  2020-09-12       Impact factor: 2.524

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Authors:  Nivedhitha Mahendran; P M Durai Raj Vincent; Kathiravan Srinivasan; Chuan-Yu Chang
Journal:  Front Genet       Date:  2020-12-10       Impact factor: 4.599

6.  A Novel Biomarker Identification Approach for Gastric Cancer Using Gene Expression and DNA Methylation Dataset.

Authors:  Ge Zhang; Zijing Xue; Chaokun Yan; Jianlin Wang; Huimin Luo
Journal:  Front Genet       Date:  2021-03-25       Impact factor: 4.599

7.  Elastic Correlation Adjusted Regression (ECAR) scores for high dimensional variable importance measuring.

Authors:  Yuan Zhou; Botao Fa; Ting Wei; Jianle Sun; Zhangsheng Yu; Yue Zhang
Journal:  Sci Rep       Date:  2021-12-02       Impact factor: 4.379

8.  A novel bio-inspired hybrid multi-filter wrapper gene selection method with ensemble classifier for microarray data.

Authors:  Babak Nouri-Moghaddam; Mehdi Ghazanfari; Mohammad Fathian
Journal:  Neural Comput Appl       Date:  2021-09-12       Impact factor: 5.606

9.  Robust proportional overlapping analysis for feature selection in binary classification within functional genomic experiments.

Authors:  Muhammad Hamraz; Naz Gul; Mushtaq Raza; Dost Muhammad Khan; Umair Khalil; Seema Zubair; Zardad Khan
Journal:  PeerJ Comput Sci       Date:  2021-06-01

10.  Integrative genomic expression analysis reveals stable differences between lung cancer and systemic sclerosis.

Authors:  Heng Li; Liping Ding; Xiaoping Hong; Yulan Chen; Rui Liao; Tingting Wang; Shuhui Meng; Zhenyou Jiang; Dongzhou Liu
Journal:  BMC Cancer       Date:  2021-03-10       Impact factor: 4.430

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