Literature DB >> 28779295

Impact of Land-use Change on Vertical Soil Bacterial Communities in Sabah.

Hoe Seng Tin1, Kishneth Palaniveloo1, Junia Anilik1, Mathavan Vickneswaran1, Yukihiro Tashiro2,3, Charles S Vairappan4, Kenji Sakai2,3.   

Abstract

Decline in forest productivity due to forest conversion is defining the Bornean landscape. Responses of bacterial communities due to land-use changes are vital and could define our understanding of ecosystem functions. This study reports the changes in bacterial community structure in organic soil (0-5 cm; O-Horizon) and organic-mineral soil (5-15 cm; A-Horizon) across Maliau Basin Conservation Area old growth forest (MBOG), Fragment E logged forest (FELF) located in Kalabakan Forest Reserve to Benta Wawasan oil palm plantation (BWOP) using two-step PCR amplicon analysis of bacteria DNA on Illumina Miseq next generation sequencing. A total of 30 soil samples yielded 893,752-OTU reads at ≥97% similarity from 5,446,512 good quality sequences. Soil from BWOP plantation showed highest unshared OTUs for organic (49.2%) and organic-mineral (50.9%) soil. MBOG soil showed a drop in unshared OTUs between organic (48.6%) and organic-mineral (33.9%). At phylum level, Proteobacteria dominated MBOG but shifted to Actinobacteria in logged and plantation soil. Present findings also indicated that only FELF exhibited change in bacterial communities along the soil depth, moving from the organic to the organic-mineral layer. Both layers of BWOP plantation soils deviated from other forests' soil in β-diversity analysis. To our knowledge, this is the first report on transitions of bacterial community structures with different soil horizons in the tropical rainforest including Borneo, Sabah. Borneo tropical soils form a large reservoir for soil bacteria and future exploration is needed for fully understanding the diversity structure and their bacterial functional properties.

Entities:  

Keywords:  Borneo; Logged forest; Oil palm plantation; Soil microbiome; Tropical rain forest

Mesh:

Substances:

Year:  2017        PMID: 28779295     DOI: 10.1007/s00248-017-1043-6

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  13 in total

1.  Tropical forest cover change in the 1990s and options for future monitoring.

Authors:  Philippe Mayaux; Peter Holmgren; Frédéric Achard; Hugh Eva; Hans-Jürgen Stibig; Anne Branthomme
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-02-28       Impact factor: 6.237

2.  Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity.

Authors:  Daniel H Buckley; Varisa Huangyutitham; Tyrrell A Nelson; Angelika Rumberger; Janice E Thies
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 3.  Prokaryotic photosynthesis and phototrophy illuminated.

Authors:  Donald A Bryant; Niels-Ulrik Frigaard
Journal:  Trends Microbiol       Date:  2006-09-25       Impact factor: 17.079

4.  Impact of logging and forest conversion to oil palm plantations on soil bacterial communities in Borneo.

Authors:  Larisa Lee-Cruz; David P Edwards; Binu M Tripathi; Jonathan M Adams
Journal:  Appl Environ Microbiol       Date:  2013-09-20       Impact factor: 4.792

5.  Remotely sensed evidence of tropical peatland conversion to oil palm.

Authors:  Lian Pin Koh; Jukka Miettinen; Soo Chin Liew; Jaboury Ghazoul
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.

Authors:  Jorge L M Rodrigues; Vivian H Pellizari; Rebecca Mueller; Kyunghwa Baek; Ederson da C Jesus; Fabiana S Paula; Babur Mirza; George S Hamaoui; Siu Mui Tsai; Brigitte Feigl; James M Tiedje; Brendan J M Bohannan; Klaus Nüsslein
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

7.  Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers.

Authors:  Martina Stursová; Lucia Zifčáková; Mary Beth Leigh; Robert Burgess; Petr Baldrian
Journal:  FEMS Microbiol Ecol       Date:  2012-03-27       Impact factor: 4.194

8.  Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis.

Authors:  Pattanop Kanokratana; Tanaporn Uengwetwanit; Ukrit Rattanachomsri; Benjarat Bunterngsook; Thidarat Nimchua; Sithichoke Tangphatsornruang; Vethachai Plengvidhya; Verawat Champreda; Lily Eurwilaichitr
Journal:  Microb Ecol       Date:  2010-11-06       Impact factor: 4.552

9.  The impact of tropical forest logging and oil palm agriculture on the soil microbiome.

Authors:  Binu M Tripathi; David P Edwards; Lucas William Mendes; Mincheol Kim; Ke Dong; Hyoki Kim; Jonathan M Adams
Journal:  Mol Ecol       Date:  2016-04-20       Impact factor: 6.185

10.  Tropical soil bacterial communities in Malaysia: pH dominates in the equatorial tropics too.

Authors:  Binu M Tripathi; Mincheol Kim; Dharmesh Singh; Larisa Lee-Cruz; Ang Lai-Hoe; A N Ainuddin; Rusea Go; Raha Abdul Rahim; M H A Husni; Jongsik Chun; Jonathan M Adams
Journal:  Microb Ecol       Date:  2012-02-23       Impact factor: 4.552

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