Literature DB >> 28775891

Crystal structures and supra-molecular features of 9,9-dimethyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one, 3,7-di-aza-spiro-[bi-cyclo-[3.3.1]nonane-9,1'-cyclo-penta-ne]-2,4,6,8-tetra-one and 9-methyl-9-phenyl-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one di-methyl-formamide monosolvate.

Sergey Z Vatsadze1, Marina A Manaenkova1, Evgeny V Vasilev1, Nikolai U Venskovsky2, Victor N Khrustalev2.   

Abstract

Compounds (I), C9H10N2O4, (II), C11H12N2O4, and (III), C14H12N2O4·C3H7NO represent 9,9-disubstituted-3,7-di-aza-bicyclo-[3.3.1]nonane-2,4,6,8-tetra-one deriv-atives with very similar mol-ecular geometries for the bicyclic framework: the dihedral angle between the planes of the imide groups is 74.87 (6), 73.86 (3) and 74.83 (6)° in (I)-(III), respectively. The dimethyl derivative (I) is positioned on a crystallographic twofold axis and its overall geometry deviates only slightly from idealized C2v symmetry. The spiro-cyclo-pentane derivative (II) and the phen-yl/methyl analog (III) retain only inter-nal Cs symmetry, which in the case of (II) coincides with crystallographic mirror symmetry. The cyclo-pentane moiety in (II) adopts an envelope conformation, with the spiro C atom deviating from the mean plane of the rest of the ring by 0.548 (2) Å. In compound (III), an N-H⋯O hydrogen bond is formed with the di-methyl-formamide solvent mol-ecule. In the crystal, both (I) and (II) form similar zigzag hydrogen-bonded ribbons through double inter-molecular N-H⋯O hydrogen bonds. However, whereas in (I) the ribbons are formed by two trans-arranged O=C-N-H amide fragments, the amide fragments are cis-positioned in (II). The formation of ribbons in (III) is apparently disrupted by participation of one of its N-H groups in hydrogen bonding with the solvent mol-ecule. As a result, the mol-ecules of (III) form zigzag chains rather than the ribbons through inter-molecular N-H⋯O hydrogen bonds. The crystal of (I) was a pseudo-merohedral twin.

Entities:  

Keywords:  alcaloides; crystal structure; di­aza­bicyclo­[3.3.1]nona­nes; hydrogen-bonding inter­actions; supra­molecular chemistry; tetra­ones

Year:  2017        PMID: 28775891      PMCID: PMC5499299          DOI: 10.1107/S2056989017009458

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Di­aza­bicyclo­nonane-tetra­ones are used in the synthesis of the sparteine subgroup of lupine alcaloids (Norcross et al., 2008 ▸) and are precursors in obtaining 3,7-di­aza­bicyclo­[3.3.1]nona­nes which have been studied in computer models as serine protease inhibitors (Vatsadze et al., 2016 ▸). They also have value as building blocks in the design of other biologically active compounds (Kudryavtsev et al., 2014 ▸), and in the synthesis of imaging agents for positron emission tomography (Medved’ko et al., 2016 ▸). In addition, they are good chelating ligands for 3d transition metals (Vatsadze et al., 2005 ▸) including Cu (Vatsadze et al., 2014 ▸). However, the crystal structures of this class of compounds have not been adequately characterized so far, as shown by a small number (eight) of similar structures found in the Cambridge Structural Database (CSD; Groom et al., 2016 ▸). Moreover, their ability to form different supra­molecular structures depending on the substituents at the 9-position in the heterocycle, which we report in this work, has not been not reported before. A search in the CSD for the substructure 3,7-di­aza-2,4,6,8-tetra­oxobi­cyclo­[3.3.1]nonane yielded eight hits. Although there is a similarity in chemical structure of known related compounds (Horlein et al., 1981 ▸; Norcross et al., 2008 ▸), their supra­molecular features are significantly different because of the impact of substituents and solvatation. In this work, we have synthesized three 9,9-disubstituted-3,7-di­aza­bicyclo­[3.3.1]nonane-2,4,6,8-tetra­ones and show how groups bound to C9 as well as the presence of solvate mol­ecules affect their ability to form different hydrogen-bonding systems.

Structural commentary

Compounds (I), C9H10N2O4, (II), C11H12N2O4, and (III), C14H12N2O4·C3H7NO represent 9,9-disubstituted-3,7-di­aza­bicyclo­[3.3.1]nonane-2,4,6,8-tetra­one derivatives and have very similar mol­ecular geometries (Figs. 1 ▸–3 ▸ ▸). In general, the 3,7-di­aza­bicyclo­[3.3.1]nonane-2,4,6,8-tetra­one skeleton exhibits idealized C 2v (mm2) symmetry. The mol­ecule of (I), containing two 9-methyl substituents, occupies a special position on a twofold axis [C 2 (2)], and its geometry deviates only slightly from the perfectly symmetrical C 2v. As a result of the presence of spiro-9-cyclo­pentane [in the case of (II)] and 9-phenyl and 9-methyl [in the case of (III)] substituents, the overall symmetry of these mol­ecules decreases to C s (m). However, in the crystal, the intrinsic C s symmetry remains only for the mol­ecule of (II), which occupies a special position on a mirror plane. Compound (III) crystallizes as a dimethyl formamide monosolvate, with the main mol­ecule occupying a general position.
Figure 1

The mol­ecular structure of (I). Displacement ellipsoids are shown at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. [Symmetry code: (A) 1 + x, y, −z + .]

Figure 2

The mol­ecular structure of (II). Displacement ellipsoids are shown at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. [Symmetry code: (A) x,  − y, z.]

Figure 3

The mol­ecular structure of (III)·DMF. Displacement ellipsoids are shown at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Dashed line indicates the intra­molecular N—H⋯O hydrogen bond.

The two imide fragments in the mol­ecules of (I)–(III) are almost planar (r.m.s. deviations are 0.013, 0.009 and 0.009/0.036 Å, respectively). The dihedral angles between the imide planes are 74.87 (6), 73.86 (3) and 74.83 (6)° for (I)–(III), respectively. Moreover, the four carbonyl carbon atoms in (I)–(III) are each coplanar with r.m.s. deviations of 0.018, 0.000, and 0.031 Å, respectively; the bridged carbon atom lies by 1.854 (3), 1.846 (1), and 1.858 (2) Å, respectively, above this plane in (I)–(III). The cyclo­pentane substituent in (II) adopts an envelope conformation, with the C6 spiro-carbon atom deviating from the mean plane through the other ring atoms by 0.548 (2) Å. Importantly, in (III) the main mol­ecule forms a strong N7—H7⋯O5 hydrogen bond with the dimethyl formamide solvate mol­ecule (Table 3 ▸, Fig. 3 ▸).
Table 3

Hydrogen-bond geometry (Å, °) for (III)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O1i 0.861 (19)2.12 (2)2.9650 (19)168.3 (18)
N7—H7⋯O50.90 (2)1.86 (2)2.7682 (19)178.6 (18)

Symmetry code: (i) .

Supra­molecular features

In general, any compound of type (I)–(III) could form up to six inter­molecular hydrogen bonds utilizing two hydrogen-bond donor NH groups and four hydrogen-bond acceptor carbonyl oxygen atoms. In the literature, even the unsubstituted analogue (refcode GOHHER; Norcross et al., 2008 ▸) shows only four inter­molecular hydrogen bonds involving both imide fragments of bis­pidintetra­one with the formation of an infinite three-dimensional hydrogen-bonded network. If one of the nitro­gen atoms is alkyl­ated (for example, refcode BAHFIZ; Horlein et al., 1981 ▸), the other one is involved in the formation of a doubly hydrogen-bonded dimer. When both nitro­gen atoms are functionalized [refcodes JIMWUY (Hametner et al., 2007 ▸), NAWLIH (Mereiter et al., 2014 ▸), NAWLON et al., 2014 ▸), PILXAK (Hametner et al., 2007 ▸), XAZGAH (Blakemore, et al., 2005 ▸)], no hydrogen-bonds are observed. Despite the geometrical similarity of compounds (I)-(III), they form different supra­molecular structures in the solid state. Thus, in the crystals of (I) and (II), the mol­ecules form the zigzag hydrogen-bonded ribbons by double N—H⋯O hydrogen bonds (Tables 1 ▸ and 2 ▸, Figs. 4 ▸ and 5 ▸). The hydrogen-bonded ribbons in (I) and (II) are distinguished by the binding sites of the 3,7-di­aza­bicyclo­[3.3.1]nonane-2,4,6,8-tetra­one skeleton. According to symmetry, the ribbons in (I) are formed by the two trans-arranged O=C—N—H amide fragments, whereas the binding O=C—N—H amide fragments in (II) are cis disposed. As one of the two NH groups in (III) is bonded to the dimethyl formamide solvate mol­ecule, the N—H⋯O hydrogen bonds form the zigzag chains rather than ribbons (Table 3 ▸, Fig. 6 ▸).
Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O2i 0.90 (3)2.01 (3)2.906 (2)173 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O1i 0.855 (14)2.021 (14)2.8718 (11)173.7 (13)

Symmetry code: (i) .

Figure 4

The crystal structure of (I), demonstrating the H-bonded zigzag-like ribbons propagating toward [001]. Dashed lines indicate the inter­molecular N—H⋯O hydrogen bonds.

Figure 5

The crystal structure of (II), demonstrating the H-bonded zigzag-like ribbons propagating toward [010]. Dashed lines indicate the inter­molecular N—H⋯O hydrogen bonds.

Figure 6

The crystal structure of (III)·DMF, demonstrating the H-bonded zigzag-like chains propagating toward [100]. Dashed lines indicate the inter­molecular N—H⋯O hydrogen bonds.

Synthesis and crystallization

The title compounds (I)–(III) were synthesized (Fig. 7 ▸) according to the procedure described earlier (Schon et al., 1998 ▸).
Figure 7

Synthesis of (I)–(III) from 2-cyano­acetamide and ketones.

Di­nitrile subproducts were obtained by adding 2-cyano­acetamide to the corresponding ketone [(I) – acetone, (II) – aceto­phenone, (III) – cyclo­penta­none] in ethanol at room temperature. Then, the di­nitriles were heated to 393–413 K upon stirring in an acidic medium to complete dissolving. After 10–15 min, the mixture was poured into ice–water. The precipitated tetra­oxo-compounds were filtered off by suction, recrystallized from ethanol solution and finally dried. Single crystals suitable for X-ray diffraction study were obtained by recrystallization of the crude products from DMF solution.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. The hydrogen atoms of the amino groups were localized in the difference-Fourier maps and refined isotropically with fixed displacement parameters [U iso(H) = 1.2U eq(N)]. The other hydrogen atoms were placed in calculated positions with C—H = 0.95–1.00 Å and refined in the riding/rotating model with fixed isotropic displacement parameters [U iso(H) = 1.5U eq(C) for the CH3-groups and 1.2U eq(C) for the other groups]. The crystal of (I) was a pseudo-merohedral twin. The twin matrix is ( 0 0 0 0 0.775 0 1), and BASF = 0.180 (1).
Table 4

Experimental details

 (I)(II)(III)
Crystal data
Chemical formulaC9H10N2O4 C11H12N2O4 C14H12N2O4·C3H7NO
M r 210.19236.23345.35
Crystal system, space groupMonoclinic, C2/c Orthorhombic, P n m a Orthorhombic, P b c a
Temperature (K)100120120
a, b, c (Å)11.4321 (17), 6.6263 (10), 12.4819 (19)12.8058 (6), 11.4850 (6), 6.9058 (3)7.7876 (5), 19.4656 (12), 21.7879 (13)
α, β, γ (°)90, 110.788 (3), 9090, 90, 9090, 90, 90
V3)884.0 (2)1015.67 (8)3302.8 (4)
Z 448
Radiation typeMo KαMo KαMo Kα
μ (mm−1)0.130.120.10
Crystal size (mm)0.30 × 0.20 × 0.150.30 × 0.20 × 0.200.22 × 0.20 × 0.18
 
Data collection
DiffractometerBruker SMART 1K CCDBruker SMART 1K CCDBruker SMART 1K CCD
Absorption correctionMulti-scan (SADABS; Sheldrick, 2003)Multi-scan (SADABS; Sheldrick, 2003)Multi-scan (SADABS; Sheldrick, 2003)
T min, T max 0.950, 0.9700.960, 0.9700.970, 0.975
No. of measured, independent and observed [I > 2σ(I)] reflections4993, 1289, 116515297, 2181, 178241691, 5056, 3210
R int 0.0270.0310.090
(sin θ/λ)max−1)0.7030.8020.716
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.062, 0.184, 1.060.043, 0.119, 1.030.051, 0.124, 1.01
No. of reflections128921815056
No. of parameters7485235
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.55, −0.540.42, −0.230.33, −0.26

Computer programs: APEX2 (Bruker, 2005 ▸), SAINT (Bruker, 2001 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), SHELXTL (Sheldrick, 2008 ▸).

Crystal structure: contains datablock(s) global, I, II, III. DOI: 10.1107/S2056989017009458/ld2140sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017009458/ld2140Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989017009458/ld2140IIsup3.hkl Structure factors: contains datablock(s) III. DOI: 10.1107/S2056989017009458/ld2140IIIsup4.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017009458/ld2140Isup5.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017009458/ld2140IIsup6.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017009458/ld2140IIIsup7.cml CCDC references: 1558317, 1558316, 1558315 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H10N2O4F(000) = 440
Mr = 210.19Dx = 1.579 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 11.4321 (17) ÅCell parameters from 3269 reflections
b = 6.6263 (10) Åθ = 3.5–30.0°
c = 12.4819 (19) ŵ = 0.13 mm1
β = 110.788 (3)°T = 100 K
V = 884.0 (2) Å3Prism, colourless
Z = 40.30 × 0.20 × 0.15 mm
Bruker SMART 1K CCD diffractometer1165 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
φ and ω scansθmax = 30.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −16→16
Tmin = 0.950, Tmax = 0.970k = −9→9
4993 measured reflectionsl = −17→17
1289 independent reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: mixed
wR(F2) = 0.184H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0846P)2 + 3.9571P] where P = (Fo2 + 2Fc2)/3
1289 reflections(Δ/σ)max < 0.001
74 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component twin.
xyzUiso*/Ueq
C10.39535 (15)0.3325 (3)0.25497 (14)0.0103 (4)
H10.32430.41580.25950.012*
C20.43977 (16)0.1911 (3)0.35793 (14)0.0110 (4)
O20.36911 (13)0.1256 (2)0.40357 (12)0.0156 (3)
N30.56404 (14)0.1339 (2)0.39595 (13)0.0119 (4)
H30.591 (3)0.054 (4)0.458 (2)0.014*
C40.65231 (16)0.1966 (3)0.35040 (14)0.0109 (4)
O40.75961 (13)0.1393 (2)0.39060 (12)0.0161 (4)
C50.50000.4737 (4)0.25000.0107 (5)
C60.54703 (18)0.6086 (3)0.35697 (16)0.0147 (4)
H6A0.61540.69410.35320.022*
H6B0.57740.52390.42570.022*
H6C0.47830.69390.36030.022*
U11U22U33U12U13U23
C10.0104 (7)0.0099 (8)0.0096 (7)−0.0002 (5)0.0026 (6)0.0002 (5)
C20.0117 (8)0.0105 (7)0.0094 (7)−0.0007 (6)0.0021 (6)−0.0012 (6)
O20.0148 (6)0.0192 (7)0.0135 (6)−0.0021 (5)0.0058 (5)0.0027 (5)
N30.0131 (7)0.0114 (7)0.0106 (7)0.0004 (5)0.0035 (6)0.0024 (5)
C40.0119 (8)0.0105 (7)0.0093 (7)0.0000 (6)0.0026 (6)−0.0020 (6)
O40.0131 (7)0.0200 (7)0.0139 (7)0.0037 (5)0.0031 (5)0.0006 (5)
C50.0107 (10)0.0100 (10)0.0114 (10)0.0000.0039 (8)0.000
C60.0148 (8)0.0129 (8)0.0160 (8)−0.0011 (6)0.0049 (6)−0.0039 (6)
C1—C21.525 (2)N3—H30.90 (3)
C1—C4i1.527 (2)C4—O41.210 (2)
C1—C51.537 (2)C5—C61.537 (2)
C1—H11.0000C6—H6A0.9800
C2—O21.221 (2)C6—H6B0.9800
C2—N31.382 (2)C6—H6C0.9800
N3—C41.386 (2)
C2—C1—C4i105.89 (14)O4—C4—C1i122.81 (16)
C2—C1—C5112.14 (13)N3—C4—C1i116.17 (14)
C4i—C1—C5111.67 (12)C6i—C5—C6108.8 (2)
C2—C1—H1109.0C6—C5—C1i110.59 (9)
C4i—C1—H1109.0C6—C5—C1110.87 (10)
C5—C1—H1109.0C1i—C5—C1105.1 (2)
O2—C2—N3120.80 (17)C5—C6—H6A109.5
O2—C2—C1122.27 (16)C5—C6—H6B109.5
N3—C2—C1116.90 (15)H6A—C6—H6B109.5
C2—N3—C4125.92 (15)C5—C6—H6C109.5
C2—N3—H3117.3 (18)H6A—C6—H6C109.5
C4—N3—H3116.7 (18)H6B—C6—H6C109.5
O4—C4—N3120.97 (17)
C4i—C1—C2—O2−86.7 (2)C2—N3—C4—C1i−3.3 (3)
C5—C1—C2—O2151.29 (17)C2—C1—C5—C6i178.06 (14)
C4i—C1—C2—N391.29 (17)C4i—C1—C5—C6i59.40 (19)
C5—C1—C2—N3−30.7 (2)C2—C1—C5—C6−61.11 (19)
O2—C2—N3—C4179.35 (16)C4i—C1—C5—C6−179.77 (14)
C1—C2—N3—C41.3 (3)C2—C1—C5—C1i58.38 (11)
C2—N3—C4—O4179.26 (16)C4i—C1—C5—C1i−60.28 (11)
D—H···AD—HH···AD···AD—H···A
N3—H3···O2ii0.90 (3)2.01 (3)2.906 (2)173 (3)
C11H12N2O4Dx = 1.545 Mg m3
Mr = 236.23Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PnmaCell parameters from 4118 reflections
a = 12.8058 (6) Åθ = 3.2–33.9°
b = 11.4850 (6) ŵ = 0.12 mm1
c = 6.9058 (3) ÅT = 120 K
V = 1015.67 (8) Å3Prism, colourless
Z = 40.30 × 0.20 × 0.20 mm
F(000) = 496
Bruker SMART 1K CCD diffractometer1782 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
φ and ω scansθmax = 34.8°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −19→19
Tmin = 0.960, Tmax = 0.970k = −17→18
15297 measured reflectionsl = −10→10
2181 independent reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: mixed
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0631P)2 + 0.338P] where P = (Fo2 + 2Fc2)/3
2181 reflections(Δ/σ)max < 0.001
85 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.40454 (6)0.09843 (6)0.57775 (10)0.01863 (16)
O20.56727 (6)0.10479 (6)−0.00332 (11)0.02057 (17)
C10.35046 (9)0.25000.35970 (17)0.0114 (2)
H10.28310.25000.43300.014*
C20.41314 (6)0.14320 (7)0.41787 (12)0.01265 (16)
N30.48223 (6)0.10060 (7)0.28341 (11)0.01450 (16)
H30.5177 (10)0.0407 (13)0.3159 (19)0.017*
C40.49953 (7)0.14512 (8)0.09885 (13)0.01376 (16)
C50.43357 (9)0.25000.04181 (17)0.0130 (2)
H50.42320.2500−0.10170.016*
C60.32636 (9)0.25000.14282 (17)0.0130 (2)
C70.25898 (8)0.14463 (9)0.08181 (14)0.01871 (19)
H7A0.30340.07570.05710.022*
H7B0.20780.12510.18420.022*
C80.20315 (9)0.18259 (12)−0.10339 (15)0.0277 (2)
H8A0.13070.1525−0.10510.033*
H8B0.24030.1525−0.21870.033*
U11U22U33U12U13U23
O10.0241 (3)0.0172 (3)0.0146 (3)0.0043 (2)0.0040 (2)0.0046 (2)
O20.0232 (3)0.0186 (3)0.0199 (3)0.0043 (2)0.0081 (3)−0.0004 (3)
C10.0116 (4)0.0102 (4)0.0124 (4)0.0000.0003 (4)0.000
C20.0135 (3)0.0113 (3)0.0131 (3)−0.0001 (3)0.0003 (3)0.0000 (3)
N30.0172 (3)0.0123 (3)0.0140 (3)0.0038 (2)0.0023 (2)0.0015 (2)
C40.0160 (4)0.0120 (3)0.0133 (3)−0.0006 (3)0.0010 (3)−0.0007 (3)
C50.0149 (5)0.0135 (5)0.0105 (4)0.000−0.0001 (4)0.000
C60.0130 (5)0.0137 (5)0.0124 (5)0.000−0.0017 (4)0.000
C70.0170 (4)0.0213 (4)0.0179 (4)−0.0047 (3)−0.0031 (3)−0.0026 (3)
C80.0248 (5)0.0397 (6)0.0187 (4)−0.0066 (4)−0.0075 (4)−0.0015 (4)
O1—C21.2230 (11)C5—C61.5399 (17)
O2—C41.2103 (11)C5—H51.0000
C1—C21.5200 (11)C6—C71.5448 (12)
C1—C61.5292 (17)C7—C81.5287 (14)
C1—H11.0000C7—H7A0.9900
C2—N31.3727 (11)C7—H7B0.9900
N3—C41.3910 (11)C8—C8i1.549 (3)
N3—H30.855 (14)C8—H8A0.9900
C4—C51.5231 (11)C8—H8B0.9900
C2i—C1—C2107.61 (9)C1—C6—C5105.29 (10)
C2—C1—C6111.43 (6)C1—C6—C7112.32 (7)
C2—C1—H1108.8C5—C6—C7111.99 (7)
C6—C1—H1108.8C7i—C6—C7103.14 (10)
O1—C2—N3121.26 (8)C8—C7—C6105.43 (9)
O1—C2—C1122.03 (8)C8—C7—H7A110.7
N3—C2—C1116.69 (8)C6—C7—H7A110.7
C2—N3—C4126.26 (8)C8—C7—H7B110.7
C2—N3—H3116.9 (9)C6—C7—H7B110.7
C4—N3—H3116.8 (9)H7A—C7—H7B108.8
O2—C4—N3120.51 (8)C7—C8—C8i106.57 (6)
O2—C4—C5123.33 (9)C7—C8—H8A110.4
N3—C4—C5116.06 (8)C8i—C8—H8A110.4
C4i—C5—C4104.54 (10)C7—C8—H8B110.4
C4—C5—C6112.17 (7)C8i—C8—H8B110.4
C4—C5—H5109.3H8A—C8—H8B108.6
C6—C5—H5109.3
C2i—C1—C2—O189.14 (11)C2i—C1—C6—C7i−62.03 (11)
C6—C1—C2—O1−148.42 (9)C2—C1—C6—C7i177.76 (8)
C2i—C1—C2—N3−89.33 (10)C2i—C1—C6—C7−177.76 (8)
C6—C1—C2—N333.11 (11)C2—C1—C6—C762.03 (11)
O1—C2—N3—C4−179.14 (8)C4i—C5—C6—C1−58.65 (7)
C1—C2—N3—C4−0.66 (13)C4—C5—C6—C158.65 (7)
C2—N3—C4—O2175.36 (9)C4i—C5—C6—C7i63.69 (12)
C2—N3—C4—C5−1.04 (13)C4—C5—C6—C7i−179.00 (8)
O2—C4—C5—C4i−84.18 (12)C4i—C5—C6—C7179.00 (8)
N3—C4—C5—C4i92.10 (10)C4—C5—C6—C7−63.70 (12)
O2—C4—C5—C6154.04 (9)C1—C6—C7—C8155.71 (9)
N3—C4—C5—C6−29.68 (11)C5—C6—C7—C8−86.05 (10)
C2i—C1—C6—C560.10 (7)C7i—C6—C7—C834.55 (12)
C2—C1—C6—C5−60.11 (7)C6—C7—C8—C8i−21.58 (8)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1ii0.855 (14)2.021 (14)2.8718 (11)173.7 (13)
C14H12N2O4·C3H7NODx = 1.389 Mg m3
Mr = 345.35Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 2856 reflections
a = 7.7876 (5) Åθ = 2.3–26.0°
b = 19.4656 (12) ŵ = 0.10 mm1
c = 21.7879 (13) ÅT = 120 K
V = 3302.8 (4) Å3Prism, colourless
Z = 80.22 × 0.20 × 0.18 mm
F(000) = 1456
Bruker SMART 1K CCD diffractometer3210 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.090
φ and ω scansθmax = 30.6°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −11→11
Tmin = 0.970, Tmax = 0.975k = −27→27
41691 measured reflectionsl = −31→30
5056 independent reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: mixed
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0448P)2 + 1.1286P] where P = (Fo2 + 2Fc2)/3
5056 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.91018 (15)0.32972 (6)0.24687 (5)0.0195 (3)
O21.28067 (16)0.39316 (7)0.39546 (6)0.0277 (3)
O31.05101 (18)0.54938 (6)0.41859 (6)0.0284 (3)
O40.71389 (17)0.48551 (6)0.25953 (6)0.0247 (3)
C10.7904 (2)0.39619 (8)0.33006 (7)0.0154 (3)
H10.67770.37460.31930.019*
C20.9331 (2)0.35860 (8)0.29593 (7)0.0156 (3)
N31.09219 (18)0.36122 (7)0.32247 (6)0.0169 (3)
H31.178 (2)0.3463 (10)0.3014 (9)0.020*
C41.1346 (2)0.39341 (9)0.37714 (7)0.0176 (3)
C50.9888 (2)0.42888 (8)0.41126 (8)0.0159 (3)
H51.01460.42800.45620.019*
C60.9822 (2)0.50346 (9)0.38999 (8)0.0197 (4)
N70.89576 (19)0.51620 (7)0.33590 (7)0.0196 (3)
H70.902 (3)0.5588 (10)0.3194 (9)0.024*
C80.7939 (2)0.46953 (9)0.30509 (8)0.0177 (3)
C90.8163 (2)0.39217 (8)0.40019 (7)0.0157 (3)
C100.8217 (2)0.31744 (8)0.42225 (7)0.0157 (3)
C110.7451 (2)0.26429 (9)0.38892 (8)0.0200 (4)
H110.69280.27400.35050.024*
C120.7444 (2)0.19734 (9)0.41138 (8)0.0229 (4)
H120.69120.16180.38830.027*
C130.8208 (2)0.18232 (9)0.46704 (8)0.0226 (4)
H130.82100.13650.48210.027*
C140.8969 (2)0.23430 (9)0.50061 (8)0.0218 (4)
H140.94960.22420.53890.026*
C150.8965 (2)0.30139 (9)0.47846 (8)0.0196 (4)
H150.94820.33680.50210.024*
C160.6721 (2)0.43004 (9)0.43480 (8)0.0205 (4)
H16A0.66580.47770.42050.031*
H16B0.69650.42950.47890.031*
H16C0.56230.40710.42700.031*
O50.91561 (18)0.64557 (7)0.28362 (6)0.0289 (3)
N10.84929 (19)0.65410 (7)0.18198 (7)0.0212 (3)
C170.8439 (2)0.67440 (9)0.24001 (8)0.0232 (4)
H170.77930.71460.24890.028*
C180.9381 (3)0.59137 (10)0.16458 (9)0.0284 (4)
H18A1.01810.57820.19720.043*
H18B1.00200.59910.12650.043*
H18C0.85410.55450.15830.043*
C190.7595 (3)0.69190 (10)0.13395 (9)0.0273 (4)
H19A0.69560.73010.15230.041*
H19B0.67950.66110.11280.041*
H19C0.84310.70990.10440.041*
U11U22U33U12U13U23
O10.0215 (6)0.0208 (6)0.0164 (6)0.0008 (5)−0.0011 (5)−0.0023 (5)
O20.0151 (6)0.0414 (8)0.0265 (7)−0.0016 (6)−0.0042 (5)−0.0007 (6)
O30.0373 (8)0.0194 (7)0.0286 (7)−0.0081 (6)−0.0075 (6)−0.0011 (5)
O40.0294 (7)0.0235 (7)0.0213 (6)0.0040 (5)−0.0068 (5)0.0021 (5)
C10.0142 (8)0.0162 (8)0.0160 (8)−0.0006 (6)−0.0027 (6)0.0005 (6)
C20.0166 (8)0.0145 (8)0.0156 (8)−0.0004 (6)0.0002 (6)0.0030 (6)
N30.0127 (7)0.0211 (7)0.0168 (7)0.0026 (6)0.0007 (5)0.0004 (6)
C40.0176 (8)0.0189 (8)0.0162 (8)−0.0033 (6)−0.0018 (6)0.0029 (7)
C50.0155 (8)0.0174 (8)0.0148 (8)−0.0029 (6)−0.0014 (6)−0.0001 (6)
C60.0189 (8)0.0194 (8)0.0207 (9)−0.0007 (7)−0.0009 (7)−0.0003 (7)
N70.0235 (8)0.0153 (7)0.0200 (7)−0.0010 (6)−0.0029 (6)0.0019 (6)
C80.0168 (8)0.0186 (8)0.0177 (8)0.0036 (6)0.0010 (6)−0.0019 (7)
C90.0140 (8)0.0190 (8)0.0141 (8)−0.0015 (6)−0.0009 (6)−0.0009 (6)
C100.0140 (8)0.0178 (8)0.0152 (8)−0.0023 (6)0.0037 (6)0.0002 (6)
C110.0221 (9)0.0217 (9)0.0162 (8)−0.0031 (7)−0.0002 (7)0.0002 (7)
C120.0269 (9)0.0203 (9)0.0216 (9)−0.0052 (7)0.0030 (7)−0.0032 (7)
C130.0255 (10)0.0193 (9)0.0231 (9)0.0006 (7)0.0050 (7)0.0023 (7)
C140.0220 (9)0.0249 (9)0.0185 (8)0.0002 (7)−0.0006 (7)0.0027 (7)
C150.0198 (9)0.0208 (9)0.0183 (8)−0.0028 (7)−0.0003 (7)−0.0007 (7)
C160.0168 (8)0.0246 (9)0.0200 (8)0.0004 (7)0.0015 (7)−0.0014 (7)
O50.0420 (8)0.0229 (7)0.0218 (7)−0.0009 (6)−0.0041 (6)0.0037 (5)
N10.0230 (8)0.0195 (7)0.0210 (7)0.0020 (6)−0.0005 (6)0.0007 (6)
C170.0286 (10)0.0169 (8)0.0240 (9)−0.0006 (7)0.0012 (8)0.0011 (7)
C180.0328 (11)0.0249 (10)0.0276 (10)0.0060 (8)0.0064 (8)−0.0001 (8)
C190.0317 (11)0.0259 (10)0.0244 (9)−0.0014 (8)−0.0075 (8)0.0049 (8)
O1—C21.2209 (19)C11—H110.9500
O2—C41.205 (2)C12—C131.382 (3)
O3—C61.214 (2)C12—H120.9500
O4—C81.213 (2)C13—C141.382 (2)
C1—C21.524 (2)C13—H130.9500
C1—C81.528 (2)C14—C151.392 (2)
C1—C91.543 (2)C14—H140.9500
C1—H11.0000C15—H150.9500
C2—N31.368 (2)C16—H16A0.9800
N3—C41.386 (2)C16—H16B0.9800
N3—H30.861 (19)C16—H16C0.9800
C4—C51.523 (2)O5—C171.237 (2)
C5—C61.525 (2)N1—C171.325 (2)
C5—C91.541 (2)N1—C181.454 (2)
C5—H51.0000N1—C191.458 (2)
C6—N71.380 (2)C17—H170.9500
N7—C81.380 (2)C18—H18A0.9800
N7—H70.90 (2)C18—H18B0.9800
C9—C101.533 (2)C18—H18C0.9800
C9—C161.540 (2)C19—H19A0.9800
C10—C151.392 (2)C19—H19B0.9800
C10—C111.398 (2)C19—H19C0.9800
C11—C121.392 (2)
C2—C1—C8105.18 (13)C12—C11—C10120.78 (16)
C2—C1—C9111.30 (13)C12—C11—H11119.6
C8—C1—C9113.43 (13)C10—C11—H11119.6
C2—C1—H1108.9C13—C12—C11120.33 (17)
C8—C1—H1108.9C13—C12—H12119.8
C9—C1—H1108.9C11—C12—H12119.8
O1—C2—N3121.31 (15)C12—C13—C14119.61 (17)
O1—C2—C1122.78 (15)C12—C13—H13120.2
N3—C2—C1115.87 (14)C14—C13—H13120.2
C2—N3—C4126.58 (15)C13—C14—C15120.16 (17)
C2—N3—H3117.7 (13)C13—C14—H14119.9
C4—N3—H3115.2 (13)C15—C14—H14119.9
O2—C4—N3120.51 (16)C10—C15—C14121.10 (16)
O2—C4—C5122.95 (15)C10—C15—H15119.5
N3—C4—C5116.53 (14)C14—C15—H15119.5
C4—C5—C6107.97 (14)C9—C16—H16A109.5
C4—C5—C9111.32 (13)C9—C16—H16B109.5
C6—C5—C9111.39 (14)H16A—C16—H16B109.5
C4—C5—H5108.7C9—C16—H16C109.5
C6—C5—H5108.7H16A—C16—H16C109.5
C9—C5—H5108.7H16B—C16—H16C109.5
O3—C6—N7121.43 (16)C17—N1—C18120.96 (15)
O3—C6—C5122.02 (15)C17—N1—C19121.26 (15)
N7—C6—C5116.55 (15)C18—N1—C19117.71 (15)
C6—N7—C8125.29 (15)O5—C17—N1125.66 (17)
C6—N7—H7118.5 (13)O5—C17—H17117.2
C8—N7—H7116.2 (13)N1—C17—H17117.2
O4—C8—N7121.65 (16)N1—C18—H18A109.5
O4—C8—C1121.45 (15)N1—C18—H18B109.5
N7—C8—C1116.88 (14)H18A—C18—H18B109.5
C10—C9—C16108.70 (13)N1—C18—H18C109.5
C10—C9—C5111.53 (13)H18A—C18—H18C109.5
C16—C9—C5109.69 (13)H18B—C18—H18C109.5
C10—C9—C1111.25 (13)N1—C19—H19A109.5
C16—C9—C1111.43 (13)N1—C19—H19B109.5
C5—C9—C1104.20 (13)H19A—C19—H19B109.5
C15—C10—C11118.01 (15)N1—C19—H19C109.5
C15—C10—C9120.04 (14)H19A—C19—H19C109.5
C11—C10—C9121.86 (14)H19B—C19—H19C109.5
C8—C1—C2—O1−88.55 (18)C4—C5—C9—C16−179.36 (13)
C9—C1—C2—O1148.23 (15)C6—C5—C9—C16−58.79 (18)
C8—C1—C2—N389.02 (16)C4—C5—C9—C1−59.96 (16)
C9—C1—C2—N3−34.20 (19)C6—C5—C9—C160.61 (16)
O1—C2—N3—C4178.71 (15)C2—C1—C9—C10−58.45 (17)
C1—C2—N3—C41.1 (2)C8—C1—C9—C10−176.82 (13)
C2—N3—C4—O2−178.77 (16)C2—C1—C9—C16−179.93 (13)
C2—N3—C4—C50.6 (2)C8—C1—C9—C1661.69 (18)
O2—C4—C5—C687.7 (2)C2—C1—C9—C561.86 (16)
N3—C4—C5—C6−91.58 (17)C8—C1—C9—C5−56.52 (17)
O2—C4—C5—C9−149.71 (16)C16—C9—C10—C15−77.40 (18)
N3—C4—C5—C931.0 (2)C5—C9—C10—C1543.7 (2)
C4—C5—C6—O3−96.53 (19)C1—C9—C10—C15159.54 (15)
C9—C5—C6—O3140.95 (17)C16—C9—C10—C1199.18 (17)
C4—C5—C6—N782.61 (18)C5—C9—C10—C11−139.75 (16)
C9—C5—C6—N7−39.9 (2)C1—C9—C10—C11−23.9 (2)
O3—C6—N7—C8−170.25 (17)C15—C10—C11—C12−0.2 (2)
C5—C6—N7—C810.6 (2)C9—C10—C11—C12−176.84 (16)
C6—N7—C8—O4175.77 (16)C10—C11—C12—C13−0.4 (3)
C6—N7—C8—C1−5.8 (2)C11—C12—C13—C140.5 (3)
C2—C1—C8—O487.35 (18)C12—C13—C14—C150.0 (3)
C9—C1—C8—O4−150.80 (15)C11—C10—C15—C140.7 (2)
C2—C1—C8—N7−91.04 (16)C9—C10—C15—C14177.42 (15)
C9—C1—C8—N730.8 (2)C13—C14—C15—C10−0.6 (3)
C4—C5—C9—C1060.15 (17)C18—N1—C17—O53.0 (3)
C6—C5—C9—C10−179.28 (13)C19—N1—C17—O5179.89 (18)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.861 (19)2.12 (2)2.9650 (19)168.3 (18)
N7—H7···O50.90 (2)1.86 (2)2.7682 (19)178.6 (18)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A practical synthesis of (+/-)-alpha-isosparteine from a tetraoxobispidine core.

Authors:  Paul R Blakemore; Colin Kilner; Neil R Norcross; Peter C Astles
Journal:  Org Lett       Date:  2005-10-13       Impact factor: 6.005

3.  Synthesis, pharmacological characterization, and quantitative structure-activity relationship analyses of 3,7,9,9-tetraalkylbispidines: derivatives with specific bradycardic activity.

Authors:  U Schön; J Antel; R Brückner; J Messinger; R Franke; A Gruska
Journal:  J Med Chem       Date:  1998-01-29       Impact factor: 7.446

4.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  6 in total

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