| Literature DB >> 28775884 |
Jim Simpson1, Shaaban K Mohamed2,3, Talaat I El-Emary4, Mustafa R Albayati5.
Abstract
The title compound, C16H13N3OS, comprises an oxa-diazo-lethione ring bound to the N atom of an almost planar carbazole ring system (r.m.s. deviation = 0.0088 Å) through an ethyl-ene chain. The oxa-diazole ring is inclined to the the carbazole ring system by 40.71 (6)°. In the crystal, N-H⋯O, N-H⋯S, C-H⋯N and C-H⋯S hydrogen bonds combine with C-H⋯π(ring) and π-π contacts to stack the mol-ecules along the b-axis direction.Entities:
Keywords: C—H⋯π(ring) contacts; carbazole; crystal structure; hydrogen bonds; oxadiazolethione; π–π stacking
Year: 2017 PMID: 28775884 PMCID: PMC5499292 DOI: 10.1107/S2056989017009252
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) with ellipsoids drawn at the 50% probability level.
Figure 2Rows of molecules of (I) along b. In this and subsequent figures, N—H⋯S (orange), N—H⋯O (dark blue) and C—H⋯N (light blue) hydrogen bonds are drawn as coloured dashed lines. C—H⋯π contacts are shown as green dotted lines with ring centroids displayed as coloured spheres.
Hydrogen-bond geometry (Å, °)
Cg4 is the centroid of the C11–C16 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.89 (2) | 2.75 (2) | 3.6053 (14) | 162.8 (19) |
| N1—H1 | 0.89 (2) | 2.62 (2) | 3.0707 (18) | 112.5 (16) |
| C3—H3 | 0.99 | 2.93 | 3.9061 (16) | 169 |
| C4—H4 | 0.99 | 2.67 | 3.495 (2) | 141 |
| C4—H4 | 0.99 | 2.87 | 3.4577 (17) | 119 |
| C12—H12⋯ | 0.95 | 3.22 | 4.073 (2) | 151 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Inversion dimers formed by C—H⋯S hydrogen bonds (dashed yellow lines) stacking rows of molecules of (I) along b.
Figure 4Chains of molecules of (I) along the ac diagonal. Centroid–centroid contacts are drawn as green dotted lines.
Figure 5Overall packing of (I) viewed along the b-axis direction. Representative C—H⋯π hydrogen bonds and π–π contacts are shown as green dotted lines.
Experimental details
| Crystal data | |
| Chemical formula | C16H13N3OS |
|
| 295.35 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 16.6868 (5), 4.9600 (1), 17.2353 (6) |
| β (°) | 105.909 (3) |
|
| 1371.87 (7) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 2.11 |
| Crystal size (mm) | 0.27 × 0.15 × 0.09 |
| Data collection | |
| Diffractometer | Agilent SuperNova, Dual, Cu at zero, Atlas |
| Absorption correction | Multi-scan ( |
|
| 0.763, 1.000 |
| No. of measured, independent and observed [ | 11013, 2849, 2626 |
|
| 0.063 |
| (sin θ/λ)max (Å−1) | 0.631 |
| Refinement | |
|
| 0.045, 0.125, 1.06 |
| No. of reflections | 2849 |
| No. of parameters | 193 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.43, −0.48 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), TITAN2000 (Hunter & Simpson, 1999 ▸), Mercury (Macrae et al., 2008 ▸), enCIFer (Allen et al., 2004 ▸), PLATON (Spek, 2009 ▸), publCIF (Westrip, 2010 ▸) and WinGX (Farrugia, 2012 ▸).
| C16H13N3OS | |
| Monoclinic, | Cu |
| Cell parameters from 7352 reflections | |
| θ = 6.5–76.5° | |
| µ = 2.11 mm−1 | |
| β = 105.909 (3)° | |
| Plate, colourless | |
| 0.27 × 0.15 × 0.09 mm |
| Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer | 2849 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2626 reflections with |
| Detector resolution: 5.1725 pixels mm-1 | |
| ω scans | θmax = 76.5°, θmin = 5.3° |
| Absorption correction: multi-scan ( | |
| 11013 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2849 reflections | Δρmax = 0.43 e Å−3 |
| 193 parameters | Δρmin = −0.48 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.55153 (7) | 0.1963 (2) | 0.58574 (7) | 0.0155 (3) | |
| C1 | 0.50674 (9) | 0.3454 (3) | 0.62638 (9) | 0.0151 (3) | |
| S1 | 0.43636 (2) | 0.21061 (9) | 0.66526 (2) | 0.01955 (16) | |
| N1 | 0.53275 (8) | 0.5979 (3) | 0.62294 (8) | 0.0158 (3) | |
| H1N | 0.5152 (14) | 0.740 (5) | 0.6449 (14) | 0.019* | |
| N2 | 0.59279 (8) | 0.6190 (3) | 0.58088 (8) | 0.0168 (3) | |
| C2 | 0.60197 (9) | 0.3745 (3) | 0.56023 (9) | 0.0146 (3) | |
| C3 | 0.66006 (10) | 0.2674 (3) | 0.51646 (10) | 0.0175 (3) | |
| H6A | 0.6797 | 0.4173 | 0.4885 | 0.021* | |
| H3B | 0.6301 | 0.1372 | 0.4751 | 0.021* | |
| C4 | 0.73573 (9) | 0.1269 (3) | 0.57370 (10) | 0.0168 (3) | |
| H4A | 0.7160 | −0.0214 | 0.6022 | 0.020* | |
| H4B | 0.7707 | 0.0470 | 0.5416 | 0.020* | |
| N3 | 0.78545 (8) | 0.3109 (3) | 0.63217 (8) | 0.0151 (3) | |
| C5 | 0.77515 (9) | 0.3625 (3) | 0.70793 (9) | 0.0154 (3) | |
| C6 | 0.72386 (10) | 0.2314 (4) | 0.74787 (10) | 0.0201 (4) | |
| H6 | 0.6892 | 0.0851 | 0.7237 | 0.024* | |
| C7 | 0.72578 (11) | 0.3239 (4) | 0.82431 (11) | 0.0273 (4) | |
| H7 | 0.6917 | 0.2390 | 0.8531 | 0.033* | |
| C8 | 0.77677 (13) | 0.5393 (4) | 0.85996 (10) | 0.0309 (4) | |
| H8 | 0.7763 | 0.5987 | 0.9122 | 0.037* | |
| C9 | 0.82767 (11) | 0.6669 (4) | 0.82050 (11) | 0.0262 (4) | |
| H9 | 0.8621 | 0.8130 | 0.8452 | 0.031* | |
| C10 | 0.82777 (9) | 0.5777 (3) | 0.74355 (10) | 0.0182 (3) | |
| C11 | 0.87157 (9) | 0.6589 (3) | 0.68573 (10) | 0.0190 (3) | |
| C12 | 0.93139 (10) | 0.8561 (4) | 0.68605 (12) | 0.0274 (4) | |
| H12 | 0.9509 | 0.9717 | 0.7312 | 0.033* | |
| C13 | 0.96158 (11) | 0.8797 (4) | 0.61920 (13) | 0.0327 (5) | |
| H13 | 1.0023 | 1.0130 | 0.6188 | 0.039* | |
| C14 | 0.93329 (11) | 0.7113 (4) | 0.55235 (13) | 0.0296 (4) | |
| H14 | 0.9556 | 0.7320 | 0.5076 | 0.036* | |
| C15 | 0.87311 (10) | 0.5133 (4) | 0.54963 (11) | 0.0223 (4) | |
| H15 | 0.8535 | 0.3998 | 0.5040 | 0.027* | |
| C16 | 0.84324 (9) | 0.4908 (3) | 0.61765 (10) | 0.0167 (3) |
| O1 | 0.0145 (5) | 0.0103 (5) | 0.0207 (6) | −0.0003 (4) | 0.0030 (4) | −0.0018 (4) |
| C1 | 0.0127 (7) | 0.0132 (7) | 0.0162 (7) | 0.0011 (6) | −0.0014 (5) | −0.0011 (5) |
| S1 | 0.0185 (2) | 0.0185 (3) | 0.0215 (2) | −0.00502 (14) | 0.00544 (16) | −0.00070 (14) |
| N1 | 0.0149 (6) | 0.0108 (7) | 0.0222 (6) | −0.0002 (5) | 0.0057 (5) | −0.0018 (5) |
| N2 | 0.0139 (6) | 0.0136 (7) | 0.0230 (7) | −0.0003 (5) | 0.0052 (5) | 0.0000 (5) |
| C2 | 0.0116 (6) | 0.0129 (7) | 0.0166 (7) | −0.0004 (6) | −0.0006 (5) | 0.0005 (6) |
| C3 | 0.0155 (7) | 0.0185 (8) | 0.0173 (7) | 0.0004 (6) | 0.0023 (6) | −0.0030 (6) |
| C4 | 0.0136 (7) | 0.0144 (7) | 0.0217 (7) | 0.0006 (6) | 0.0035 (6) | −0.0029 (6) |
| N3 | 0.0110 (6) | 0.0156 (7) | 0.0184 (7) | −0.0021 (5) | 0.0035 (5) | −0.0013 (5) |
| C5 | 0.0114 (6) | 0.0162 (8) | 0.0167 (7) | 0.0050 (6) | 0.0006 (5) | 0.0015 (6) |
| C6 | 0.0144 (7) | 0.0226 (8) | 0.0231 (8) | 0.0053 (6) | 0.0047 (6) | 0.0050 (6) |
| C7 | 0.0261 (9) | 0.0351 (11) | 0.0225 (9) | 0.0143 (8) | 0.0097 (7) | 0.0099 (7) |
| C8 | 0.0371 (10) | 0.0367 (11) | 0.0166 (8) | 0.0175 (8) | 0.0035 (7) | 0.0002 (7) |
| C9 | 0.0254 (8) | 0.0242 (9) | 0.0215 (8) | 0.0089 (7) | −0.0061 (6) | −0.0032 (7) |
| C10 | 0.0131 (7) | 0.0175 (8) | 0.0188 (7) | 0.0048 (6) | −0.0047 (5) | 0.0011 (6) |
| C11 | 0.0098 (6) | 0.0157 (8) | 0.0259 (8) | 0.0017 (6) | −0.0048 (6) | 0.0030 (6) |
| C12 | 0.0145 (7) | 0.0189 (9) | 0.0395 (10) | −0.0035 (7) | −0.0081 (7) | 0.0056 (8) |
| C13 | 0.0122 (7) | 0.0283 (10) | 0.0525 (12) | −0.0042 (7) | −0.0001 (7) | 0.0169 (9) |
| C14 | 0.0167 (8) | 0.0314 (11) | 0.0424 (11) | 0.0031 (7) | 0.0107 (7) | 0.0164 (8) |
| C15 | 0.0173 (7) | 0.0217 (9) | 0.0295 (8) | 0.0040 (6) | 0.0090 (6) | 0.0063 (7) |
| C16 | 0.0089 (6) | 0.0152 (8) | 0.0247 (8) | 0.0025 (5) | 0.0024 (5) | 0.0048 (6) |
| O1—C1 | 1.3723 (18) | C6—C7 | 1.387 (3) |
| O1—C2 | 1.3732 (18) | C6—H6 | 0.9500 |
| C1—N1 | 1.332 (2) | C7—C8 | 1.399 (3) |
| C1—S1 | 1.6452 (16) | C7—H7 | 0.9500 |
| N1—N2 | 1.3922 (18) | C8—C9 | 1.379 (3) |
| N1—H1N | 0.89 (2) | C8—H8 | 0.9500 |
| N2—C2 | 1.285 (2) | C9—C10 | 1.398 (2) |
| N2—O1i | 2.9516 (18) | C9—H9 | 0.9500 |
| C2—C3 | 1.480 (2) | C10—C11 | 1.445 (2) |
| C3—C4 | 1.540 (2) | C11—C12 | 1.396 (2) |
| C3—H6A | 0.9900 | C11—C16 | 1.411 (2) |
| C3—H3B | 0.9900 | C12—C13 | 1.383 (3) |
| C4—N3 | 1.442 (2) | C12—H12 | 0.9500 |
| C4—H4A | 0.9900 | C13—C14 | 1.396 (3) |
| C4—H4B | 0.9900 | C13—H13 | 0.9500 |
| N3—C16 | 1.386 (2) | C14—C15 | 1.396 (3) |
| N3—C5 | 1.387 (2) | C14—H14 | 0.9500 |
| C5—C6 | 1.397 (2) | C15—C16 | 1.398 (2) |
| C5—C10 | 1.411 (2) | C15—H15 | 0.9500 |
| C1—O1—C2 | 106.49 (12) | C7—C6—H6 | 121.4 |
| N1—C1—O1 | 104.73 (13) | C5—C6—H6 | 121.4 |
| N1—C1—S1 | 132.68 (13) | C6—C7—C8 | 121.53 (17) |
| O1—C1—S1 | 122.56 (12) | C6—C7—H7 | 119.2 |
| C1—N1—N2 | 112.56 (13) | C8—C7—H7 | 119.2 |
| C1—N1—H1N | 125.4 (14) | C9—C8—C7 | 121.11 (17) |
| N2—N1—H1N | 122.1 (14) | C9—C8—H8 | 119.4 |
| C2—N2—N1 | 103.34 (13) | C7—C8—H8 | 119.4 |
| C2—N2—O1i | 165.93 (11) | C8—C9—C10 | 118.93 (18) |
| N1—N2—O1i | 81.45 (9) | C8—C9—H9 | 120.5 |
| N2—C2—O1 | 112.87 (13) | C10—C9—H9 | 120.5 |
| N2—C2—C3 | 128.62 (15) | C9—C10—C5 | 119.30 (16) |
| O1—C2—C3 | 118.48 (14) | C9—C10—C11 | 134.28 (17) |
| C2—C3—C4 | 111.86 (13) | C5—C10—C11 | 106.41 (14) |
| C2—C3—H6A | 109.2 | C12—C11—C16 | 119.57 (17) |
| C4—C3—H6A | 109.2 | C12—C11—C10 | 133.50 (17) |
| C2—C3—H3B | 109.2 | C16—C11—C10 | 106.93 (14) |
| C4—C3—H3B | 109.2 | C13—C12—C11 | 118.63 (19) |
| H6A—C3—H3B | 107.9 | C13—C12—H12 | 120.7 |
| N3—C4—C3 | 112.02 (13) | C11—C12—H12 | 120.7 |
| N3—C4—H4A | 109.2 | C12—C13—C14 | 121.24 (17) |
| C3—C4—H4A | 109.2 | C12—C13—H13 | 119.4 |
| N3—C4—H4B | 109.2 | C14—C13—H13 | 119.4 |
| C3—C4—H4B | 109.2 | C15—C14—C13 | 121.73 (18) |
| H4A—C4—H4B | 107.9 | C15—C14—H14 | 119.1 |
| C16—N3—C5 | 108.85 (13) | C13—C14—H14 | 119.1 |
| C16—N3—C4 | 125.23 (14) | C14—C15—C16 | 116.51 (17) |
| C5—N3—C4 | 125.38 (13) | C14—C15—H15 | 121.7 |
| N3—C5—C6 | 128.95 (15) | C16—C15—H15 | 121.7 |
| N3—C5—C10 | 109.05 (14) | N3—C16—C15 | 128.93 (16) |
| C6—C5—C10 | 122.00 (15) | N3—C16—C11 | 108.74 (14) |
| C7—C6—C5 | 117.12 (17) | C15—C16—C11 | 122.32 (16) |
| C2—O1—C1—N1 | −0.16 (15) | C8—C9—C10—C5 | 0.8 (2) |
| C2—O1—C1—S1 | 178.36 (11) | C8—C9—C10—C11 | −179.84 (17) |
| O1—C1—N1—N2 | 0.37 (16) | N3—C5—C10—C9 | 179.65 (14) |
| S1—C1—N1—N2 | −177.93 (12) | C6—C5—C10—C9 | −1.3 (2) |
| C1—N1—N2—C2 | −0.44 (17) | N3—C5—C10—C11 | 0.15 (17) |
| C1—N1—N2—O1i | 166.09 (12) | C6—C5—C10—C11 | 179.21 (14) |
| N1—N2—C2—O1 | 0.32 (17) | C9—C10—C11—C12 | 1.0 (3) |
| O1i—N2—C2—O1 | −108.2 (4) | C5—C10—C11—C12 | −179.56 (18) |
| N1—N2—C2—C3 | −177.54 (14) | C9—C10—C11—C16 | −179.05 (17) |
| O1i—N2—C2—C3 | 73.9 (5) | C5—C10—C11—C16 | 0.35 (17) |
| C1—O1—C2—N2 | −0.11 (17) | C16—C11—C12—C13 | −0.3 (2) |
| C1—O1—C2—C3 | 177.99 (13) | C10—C11—C12—C13 | 179.55 (17) |
| N2—C2—C3—C4 | 102.47 (19) | C11—C12—C13—C14 | 0.1 (3) |
| O1—C2—C3—C4 | −75.29 (17) | C12—C13—C14—C15 | 0.4 (3) |
| C2—C3—C4—N3 | −62.96 (18) | C13—C14—C15—C16 | −0.6 (3) |
| C3—C4—N3—C16 | −79.78 (18) | C5—N3—C16—C15 | 179.80 (15) |
| C3—C4—N3—C5 | 90.85 (18) | C4—N3—C16—C15 | −8.3 (3) |
| C16—N3—C5—C6 | −179.58 (15) | C5—N3—C16—C11 | 0.82 (17) |
| C4—N3—C5—C6 | 8.5 (3) | C4—N3—C16—C11 | 172.75 (14) |
| C16—N3—C5—C10 | −0.60 (17) | C14—C15—C16—N3 | −178.53 (16) |
| C4—N3—C5—C10 | −172.52 (14) | C14—C15—C16—C11 | 0.3 (2) |
| N3—C5—C6—C7 | 179.70 (15) | C12—C11—C16—N3 | 179.20 (14) |
| C10—C5—C6—C7 | 0.8 (2) | C10—C11—C16—N3 | −0.72 (17) |
| C5—C6—C7—C8 | 0.0 (2) | C12—C11—C16—C15 | 0.1 (2) |
| C6—C7—C8—C9 | −0.5 (3) | C10—C11—C16—C15 | −179.78 (14) |
| C7—C8—C9—C10 | 0.0 (3) |
| H··· | ||||
| N1—H1 | 0.89 (2) | 2.75 (2) | 3.6053 (14) | 162.8 (19) |
| N1—H1 | 0.89 (2) | 2.62 (2) | 3.0707 (18) | 112.5 (16) |
| C3—H3 | 0.99 | 2.93 | 3.9061 (16) | 169 |
| C4—H4 | 0.99 | 2.67 | 3.495 (2) | 141 |
| C4—H4 | 0.99 | 2.87 | 3.4577 (17) | 119 |
| C12—H12··· | 0.95 | 3.22 | 4.073 (2) | 151 |