Literature DB >> 28775883

Crystal structure of (E)-2-hy-droxy-1,2-di-phenyl-ethan-1-one oxime.

Hans Reuter1, Coco K Y A Okio2.   

Abstract

The title compound, class="Chemical">C14H13NO2, is a commercially available material and can be used as a multidentate ligand. The mol-ecule of the asymmetric unit has an R configuration, while the correclass="Chemical">sponding S-configured mol-ecule of the racemic mixture is generated by a crystallographic centre of symmetry. Both hy-droxy groups (the H atom of the <class="Chemical">span class="Chemical">oxime group is equally disordered over two positions) are involved in hydrogen bonding, leading to the formation of chains extending parallel to [001].

Entities:  

Keywords:  crystal structure; disorder; α-benzoinoxime

Year:  2017        PMID: 28775883      PMCID: PMC5499291          DOI: 10.1107/S2056989017008866

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The title compound (E)-2-hy­droxy-1,2-diphenyl-ethan-1-one class="Chemical">oxime, <class="Chemical">span class="Chemical">C14H13NO2, is commercially available and can be used as a multidentate ligand for which many trivial names such as cuprone or alpha-benzoin, and abbreviations including AboH2, BzoxH2, are in use. Used for a long time for the determination of manganese or copper in steel (Feigl, 1923 ▸; Knowles, 1932 ▸; Kar, 1935 ▸), BzoxH2 has attracted considerable attention nowadays in the coordination chemistry of transition metals for the preparation of mol­ecular wheels and high-nuclearity metal units with copper, manganese or nickel cations (Stamatatos et al., 2012 ▸; Vlahopoulou et al., 2009 ▸; Koumousi et al. 2010 ▸; Karotsis et al., 2009 ▸). In the course of a project to evaluate the reactivity of BzoxH2 towards organotin(IV) compounds, we obtained high-quality single crystals of the title compound which we have used for structure determination by X-ray diffraction.

Structural commentary

class="Chemical">BzoxH2 crystallizes in the centrosymmetric monoclinic class="Chemical">space group C2/c with eight mol­ecules in the unit cell and one mol­ecule in the asymmetric unit. As the compound possesses an asymmetric <class="Chemical">span class="Chemical">carbon atom (C2), the mol­ecule of the asymmetric unit has an R-configuration while the corresponding S-configured mol­ecule of the racemic mixture is generated by a crystallographic centre of symmetry. Both mol­ecules also show the E configuration at the N=C double bond of the oxime moiety (Fig. 1 ▸).
Figure 1

The asymmetric unit of the title compound, showing the atom-labelling scheme and displacement ellipsoids for the non-H atoms at the 50% probability level; split positions of the H atom attached to atom O2 are labelled H3 and H4.

The length [1.278 (2) Å] of the N=C double bond (Table 1 ▸) is consistent with the value of 1.281 (13) Å found in other <span class="Chemical">oxime moieties (Allen et al., 1987 ▸). In addition, this moiety is characterized by a bond angle of 115.5 (1)° at the N atom and of 102.1° at the O atom. The central C—C bond of the mol­ecule has a length of 1.525 (2), which is also in good accord­ance with a typical single bond between class="Chemical">sp 3 (C2) and class="Chemical">sp 2 (C1) hybridized C atoms. As a consequence of the different hybridization states, however, the bonds of these two <class="Chemical">span class="Chemical">carbon atoms to their phenyl groups are slightly different: 1.512 (2) Å for C2 and 1.484 (2) Å for C1, respectively. The hy­droxy group attached to C2 shows a C—O bond length of 1.425 (2) Å, which also lies in the normal range (1.421–1.433 Å) of a C2–CH–OH group (Allen et al., 1987 ▸).
Table 1

Selected geometric parameters (Å, °)

O1—N11.404 (1)C1—C21.525 (2)
C1—N11.278 (2)O2—C21.425 (2)
    
N1—C1—C2114.3 (1)C1—N1—O1115.5 (1)
C11—C1—C2117.7 (1)O2—C2—C1110.1 (1)
The two phenyl groups exhibit a mean CC bond length of 1.387 (5) Å [variation: 1.374 (3)–1.398 (2) Å], in excellent agreement with the literature value (Allen et al., 1987 ▸) of 1.387 (10) Å for Car—Car. The mean value of the endocyclic bond angles within the phenyl rings is 120.0 (5)° with minima at the ipso <span class="Chemical">carbon atoms C11 [118.3 (1)°] and C21 [119.1 (1)°]. The phenyl rings form an inter­planar angle of 80.72 (5)°.

Supra­molecular features

The mol­ecule possesses two hy­droxy groups which, in principle, can act as class="Species">donors and acceptors for <class="Chemical">span class="Chemical">hydrogen bonding while the N atom of the oxime moiety can only act as an acceptor atom in the formation of hydrogen bonds. In fact, the crystal packing (Fig. 2 ▸) with its clear separation of polar and non-polar moieties, results from two different types of hydrogen bonds (Table 2 ▸), giving rise to a one-dimensional tube-like arrangement of the mol­ecules propagating along [001]. In the first type of hydrogen bond, only the hy­droxy group attached to the carbon atom C2 is involved, acting both as hydrogen-donor and hydrogen-acceptor groups (Fig. 3 ▸). Since the oxygen atoms of the resulting hydrogen bonds are related to each other by a centre of symmetry [O2O2ii = 2.829 (2) Å, 〈O2—H3⋯O2ii = 164°; symmetry code: (ii) = −x + 1, −y, −z + 1] and a twofold rotation axis [O2O2iii = 2.806 (2) Å, 〈O2—H4⋯O1iii = 175°; symmetry code (iii) = −x + 1, y, −z + ], respectively, the hydrogen atom of the hy­droxy group breaks space-group symmetry, which was considered in the structure model by two equally disordered split positions [H3/H4] of this hydrogen atom. While this kind of hydrogen-bonding system extends to an infinite number of mol­ecules, the second type of hydrogen bond is limited to two neigbouring mol­ecules. It involves the hy­droxy group of the oxime moiety that acts as an H-atom donor forming mutual hydrogen bonds with the nitro­gen atom of the oxime moiety of a neighbouring mol­ecule, giving rise to two equivalent hydrogen bonds [O1⋯N1i = 2.805 (2) Å, 〈O1—H1⋯ N1i = 144°; symmetry code: (i) = −x + 1, y, −z + ] between these two mol­ecules (Fig. 4 ▸). The two mol­ecules within the resulting six-membered ring are related to each other by a twofold rotation axis.
Figure 2

Crystal packing showing the tube-like arrangement of the mol­ecules along [001].

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.961.972.805 (2)144
O2—H3⋯O2ii 0.961.892.829 (2)164
O2—H4⋯O2iii 0.961.852.806 (2)175

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 3

Detail of the one-dimensional hydrogen-bonding system (red dashed lines) derived from the hy­droxy group attached to the C atom looking down [010]; displacement ellipsoids for the non-H atoms are drawn at the 50% probability level. Groups attached to C atoms have been omitted for clarity. Small black dots visualize the position of an inversion center [i1: , 0, 1; i2: , 0, ; i3: , 0, 0], green dots the position of twofold rotation axes [r1: , y, ; r2: , y, ]. [Symmetry codes used to generate equivalent atoms: (1) 1 − x, y,  − z; (2) x, −y, − + z; (3) 1 − x, −y, 1 − z; (4) x, −y,  + z; (5) 1 − x, y,  − z.]

Figure 4

Hydrogen-bonding system (red dashed lines) between the oxime groups of two neighbouring mol­ecules looking down [010]; displacement ellipsoids for the non-H atoms are given at the 50% probability level. The small green dot visualizes the position of the twofold rotation axis at , y, . [Symmetry codes used to generate equivalent atoms: (1) 1 − x, y,  − z.]

Synthesis and crystallization

In a typical experiment, α-benzoinclass="Chemical">oxime was refluxed with di-n-butyl­tin oxide, <class="Chemical">span class="Chemical">C8H18OSn, in ethanol for 2.5 h. Single crystals of the title compound suitable for X-ray diffraction were obtained from the ethano­lic solution layered with n-hexane.

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. All H atoms were clearly identified in difference Fourier syntheses. Those of the class="Chemical">carbon skeleton were calculated assuming idealized geometries and allowed to ride on the <class="Chemical">span class="Chemical">carbon atoms with 1.00 Å for sp 3-hybridized and 0.95 Å for aromatic H atoms, and with U iso(H) = 1.2U eq(C). The H atoms of the two hy­droxy groups were modelled with a common O—H distance of 0.96 Å before they were fixed and allowed to ride on the corresponding oxygen atom with U iso(H) = 1.2U eq(O). Disorder of the hy­droxy group attached to C2 was taken into account reducing the site occupancy of both H atoms to one-half. This suggestion was confirmed by difference-Fourier maps that clearly showed both positions.
Table 3

Experimental details

Crystal data
Chemical formulaC14H13NO2
M r 227.25
Crystal system, space groupMonoclinic, C2/c
Temperature (K)100
a, b, c (Å)24.1434 (9), 10.5348 (4), 8.9006 (4)
β (°)93.042 (2)
V3)2260.64 (16)
Z 8
Radiation typeMo Kα
μ (mm−1)0.09
Crystal size (mm)0.37 × 0.32 × 0.11
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2009)
T min, T max 0.968, 0.990
No. of measured, independent and observed [I > 2σ(I)] reflections50071, 2005, 1765
R int 0.043
(sin θ/λ)max−1)0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.036, 0.088, 1.08
No. of reflections2005
No. of parameters157
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.22, −0.18

Computer programs: APEX2 (Bruker, 2009 ▸), SAINT (Bruker, 2009 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2006 ▸) and Mercury (Macrae et al., 2008 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989017008866/wm5397sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017008866/wm5397Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017008866/wm5397Isup3.cml CCDC reference: 1556039 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H13NO2F(000) = 960
Mr = 227.25Dx = 1.335 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 24.1434 (9) ÅCell parameters from 1932 reflections
b = 10.5348 (4) Åθ = 3.1–24.4°
c = 8.9006 (4) ŵ = 0.09 mm1
β = 93.042 (2)°T = 100 K
V = 2260.64 (16) Å3Block, colourless
Z = 80.37 × 0.32 × 0.11 mm
Bruker APEXII CCD diffractometer1765 reflections with I > 2σ(I)
φ and ω scansRint = 0.043
Absorption correction: multi-scan (SADABS; Bruker, 2009)θmax = 25.0°, θmin = 2.1°
Tmin = 0.968, Tmax = 0.990h = −28→28
50071 measured reflectionsk = −12→12
2005 independent reflectionsl = −10→10
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0361P)2 + 2.1083P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2005 reflectionsΔρmax = 0.22 e Å3
157 parametersΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
O10.43413 (4)0.17890 (9)0.80605 (10)0.0241 (2)
H10.46930.17760.86190.029 (3)*
C10.41037 (6)0.14256 (12)0.55975 (15)0.0203 (3)
N10.44993 (5)0.16404 (11)0.65751 (12)0.0214 (3)
O20.48687 (4)0.10235 (9)0.40164 (11)0.0252 (3)
H30.49380.02310.45240.029 (3)*0.5
H40.49590.09730.29810.029 (3)*0.5
C20.42878 (6)0.12695 (13)0.39955 (15)0.0217 (3)
H20.40860.05310.35190.029 (3)*
C110.35015 (6)0.13354 (13)0.58375 (15)0.0210 (3)
C120.31705 (6)0.04617 (14)0.50248 (16)0.0253 (3)
H120.3332−0.00720.43070.0306 (19)*
C130.26100 (6)0.03627 (15)0.52511 (17)0.0302 (4)
H130.2391−0.02450.47000.0306 (19)*
C140.23671 (6)0.11432 (16)0.62737 (17)0.0311 (4)
H140.19820.10710.64320.0306 (19)*
C150.26863 (6)0.20283 (15)0.70637 (17)0.0283 (3)
H150.25180.25760.77550.0306 (19)*
C160.32497 (6)0.21281 (14)0.68598 (16)0.0247 (3)
H160.34660.27380.74170.0306 (19)*
C210.41529 (5)0.24451 (14)0.30732 (15)0.0223 (3)
C220.43786 (6)0.36078 (15)0.34820 (17)0.0292 (3)
H220.46270.36710.43440.040 (2)*
C230.42453 (7)0.46786 (16)0.2644 (2)0.0373 (4)
H230.43970.54780.29400.040 (2)*
C240.38915 (7)0.45886 (17)0.13770 (19)0.0402 (4)
H240.37970.53270.08070.040 (2)*
C250.36771 (7)0.34293 (18)0.09425 (18)0.0404 (4)
H250.34400.33620.00590.040 (2)*
C260.38058 (6)0.23623 (16)0.17912 (17)0.0312 (4)
H260.36540.15640.14910.040 (2)*
U11U22U33U12U13U23
O10.0247 (5)0.0303 (6)0.0176 (5)0.0021 (4)0.0046 (4)−0.0010 (4)
C10.0231 (7)0.0159 (7)0.0221 (7)0.0033 (5)0.0038 (5)0.0023 (5)
N10.0240 (6)0.0217 (6)0.0189 (6)0.0021 (5)0.0057 (5)−0.0002 (5)
O20.0211 (5)0.0259 (5)0.0292 (5)0.0051 (4)0.0078 (4)0.0033 (4)
C20.0185 (7)0.0234 (7)0.0236 (7)0.0017 (5)0.0041 (5)−0.0008 (6)
C110.0230 (7)0.0209 (7)0.0194 (7)0.0025 (5)0.0037 (5)0.0051 (5)
C120.0273 (8)0.0258 (8)0.0230 (7)0.0027 (6)0.0029 (6)0.0014 (6)
C130.0256 (8)0.0347 (9)0.0301 (8)−0.0045 (6)−0.0001 (6)0.0031 (7)
C140.0224 (8)0.0421 (9)0.0292 (8)0.0007 (7)0.0052 (6)0.0090 (7)
C150.0266 (8)0.0332 (8)0.0259 (8)0.0060 (6)0.0084 (6)0.0035 (6)
C160.0268 (8)0.0245 (7)0.0232 (7)0.0024 (6)0.0043 (6)0.0022 (6)
C210.0209 (7)0.0265 (8)0.0203 (7)0.0057 (6)0.0081 (5)0.0002 (6)
C220.0269 (8)0.0314 (8)0.0297 (8)0.0012 (6)0.0051 (6)0.0027 (7)
C230.0397 (9)0.0274 (9)0.0465 (10)0.0026 (7)0.0177 (8)0.0054 (7)
C240.0503 (10)0.0395 (10)0.0325 (9)0.0225 (8)0.0189 (8)0.0163 (8)
C250.0478 (10)0.0527 (11)0.0206 (8)0.0244 (9)0.0007 (7)0.0016 (7)
C260.0346 (8)0.0353 (9)0.0239 (8)0.0095 (7)0.0028 (6)−0.0052 (7)
O1—N11.404 (1)C14—C151.378 (2)
O1—H10.9600C14—H140.9500
C1—N11.278 (2)C15—C161.386 (2)
C1—C111.484 (2)C15—H150.9500
C1—C21.525 (2)C16—H160.9500
O2—C21.425 (2)C21—C221.381 (2)
O2—H30.9600C21—C261.382 (2)
O2—H40.9600C22—C231.381 (2)
C2—C211.512 (2)C22—H220.9500
C2—H21.0000C23—C241.382 (3)
C11—C121.396 (2)C23—H230.9500
C11—C161.398 (2)C24—C251.374 (3)
C12—C131.383 (2)C24—H240.9500
C12—H120.9500C25—C261.380 (2)
C13—C141.380 (2)C25—H250.9500
C13—H130.9500C26—H260.9500
N1—O1—H1102.1C13—C14—H14120.2
N1—C1—C11128.03 (12)C14—C15—C16120.70 (14)
N1—C1—C2114.3 (1)C14—C15—H15119.6
C11—C1—C2117.7 (1)C16—C15—H15119.6
C1—N1—O1115.5 (1)C15—C16—C11120.25 (14)
C2—O2—H3108.1C15—C16—H16119.9
C2—O2—H4105.7C11—C16—H16119.9
H3—O2—H4111.2C22—C21—C26119.12 (14)
O2—C2—C21109.84 (11)C22—C21—C2120.85 (13)
O2—C2—C1110.1 (1)C26—C21—C2120.02 (13)
C21—C2—C1110.75 (11)C23—C22—C21120.32 (15)
O2—C2—H2108.7C23—C22—H22119.8
C21—C2—H2108.7C21—C22—H22119.8
C1—C2—H2108.7C22—C23—C24120.07 (16)
C12—C11—C16118.33 (13)C22—C23—H23120.0
C12—C11—C1120.41 (12)C24—C23—H23120.0
C16—C11—C1121.26 (13)C25—C24—C23119.88 (15)
C13—C12—C11120.81 (13)C25—C24—H24120.1
C13—C12—H12119.6C23—C24—H24120.1
C11—C12—H12119.6C24—C25—C26119.95 (16)
C14—C13—C12120.31 (14)C24—C25—H25120.0
C14—C13—H13119.8C26—C25—H25120.0
C12—C13—H13119.8C25—C26—C21120.62 (16)
C15—C14—C13119.58 (14)C25—C26—H26119.7
C15—C14—H14120.2C21—C26—H26119.7
C11—C1—N1—O11.1 (2)C14—C15—C16—C110.5 (2)
C2—C1—N1—O1179.96 (10)C12—C11—C16—C150.8 (2)
N1—C1—C2—O217.34 (16)C1—C11—C16—C15179.89 (13)
C11—C1—C2—O2−163.64 (11)O2—C2—C21—C22−61.09 (16)
N1—C1—C2—C21−104.31 (14)C1—C2—C21—C2260.68 (16)
C11—C1—C2—C2174.72 (15)O2—C2—C21—C26118.01 (14)
N1—C1—C11—C12−143.31 (15)C1—C2—C21—C26−120.23 (14)
C2—C1—C11—C1237.82 (18)C26—C21—C22—C231.9 (2)
N1—C1—C11—C1637.6 (2)C2—C21—C22—C23−178.96 (13)
C2—C1—C11—C16−141.28 (13)C21—C22—C23—C24−1.0 (2)
C16—C11—C12—C13−1.5 (2)C22—C23—C24—C25−0.7 (2)
C1—C11—C12—C13179.39 (13)C23—C24—C25—C261.4 (2)
C11—C12—C13—C140.9 (2)C24—C25—C26—C21−0.5 (2)
C12—C13—C14—C150.3 (2)C22—C21—C26—C25−1.2 (2)
C13—C14—C15—C16−1.1 (2)C2—C21—C26—C25179.69 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.961.972.805 (2)144
O2—H3···O2ii0.961.892.829 (2)164
O2—H4···O2iii0.961.852.806 (2)175
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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Molecular and supramolecular Ni(II) wheels from alpha-benzoin oxime.

Authors:  Georgios Karotsis; Constantinos Stoumpos; Anna Collins; Fraser White; Simon Parsons; Alexandra M Z Slawin; Giannis S Papaefstathiou; Euan K Brechin
Journal:  Dalton Trans       Date:  2009-03-20       Impact factor: 4.390

3.  Initial employment of alpha-benzoin oxime as a route to high-nuclearity metal clusters: decanuclear CuII complexes with a wheel topology.

Authors:  Gina C Vlahopoulou; Theocharis C Stamatatos; Vassilis Psycharis; Spyros P Perlepes; George Christou
Journal:  Dalton Trans       Date:  2009-03-17       Impact factor: 4.390

4.  Alpha-benzoin oxime in higher oxidation state 3d metal cluster chemistry: structural and magnetic study of a new Mn(III)(9) complex.

Authors:  Evangelia S Koumousi; Manolis J Manos; Christos Lampropoulos; Anastasios J Tasiopoulos; Wolfgang Wernsdorfer; George Christou; Theocharis C Stamatatos
Journal:  Inorg Chem       Date:  2010-04-05       Impact factor: 5.165

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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