Literature DB >> 28771119

Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of Silvanigrellaceae fam. nov. and Silvanigrellales ord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae and Halobacteriovoraceae in the new order Bacteriovoracales ord. nov., and reclassification of the family Pseudobacteriovoracaceae in the order Oligoflexales.

Martin W Hahn1, Johanna Schmidt1, Ulrike Koll1, Manfred Rohde2, Susanne Verbarg3, Alexandra Pitt1, Ryosuke Nakai4, Takeshi Naganuma5, Elke Lang3.   

Abstract

The unusual chemo-organoheterotrophic proteobacterial strain MWH-Nonnen-W8redT was isolated from a lake located in the Black Forest (Schwarzwald), Germany, by using the filtration-acclimatization method. Phylogenetic analyses based on the 16S rRNA gene sequence of the strain could not provide clear hints on classification of the strain in one of the current classes of the phylum Proteobacteria. Whole-genome sequencing resulted in a genome size of 3.5 Mbp and revealed a quite low DNA G+C content of 32.6 mol%. In-depth phylogenetic analyses based on alignments of 74 protein sequences of a phylogenetically broad range of taxa suggested assignment of the strain to a new order of the class Oligoflexia. These analyses also suggested that the order Bdellovibrionales should be transferred from the class Deltaproteobacteria to the class Oligoflexia, that this order should be split into two orders, and that the family Pseudobacteriovoracaceae should be transferred from the order Bdellovibrionales to the order Oligoflexales. We propose to establish for strain MWH-Nonnen-W8redT (=DSM 23856T=CCUG 58639T) the novel species and genus Silvanigrella aquatica gen. nov., sp. nov. to be placed in the new family Silvanigrellaceae fam. nov. of the new order Silvanigrellales ord. nov.

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Year:  2017        PMID: 28771119      PMCID: PMC5627705          DOI: 10.1099/ijsem.0.001965

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  46 in total

1.  Dependence of marine bdellovibrios on potassium, calcium, and magnesium ions.

Authors:  A Marbach; M Shilo
Journal:  Appl Environ Microbiol       Date:  1978-07       Impact factor: 4.792

2.  By their genes ye shall know them: genomic signatures of predatory bacteria.

Authors:  Zohar Pasternak; Shmuel Pietrokovski; Or Rotem; Uri Gophna; Mor N Lurie-Weinberger; Edouard Jurkevitch
Journal:  ISME J       Date:  2012-11-29       Impact factor: 10.302

Review 3.  Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.

Authors:  Pablo Yarza; Pelin Yilmaz; Elmar Pruesse; Frank Oliver Glöckner; Wolfgang Ludwig; Karl-Heinz Schleifer; William B Whitman; Jean Euzéby; Rudolf Amann; Ramon Rosselló-Móra
Journal:  Nat Rev Microbiol       Date:  2014-09       Impact factor: 60.633

4.  Yellowstone Lake: high-energy geochemistry and rich bacterial diversity.

Authors:  Scott Clingenpeel; Richard E Macur; Jinjun Kan; William P Inskeep; Dave Lovalvo; John Varley; Eric Mathur; Kenneth Nealson; Yuri Gorby; Hongchen Jiang; Toben LaFracois; Timothy R McDermott
Journal:  Environ Microbiol       Date:  2011-03-30       Impact factor: 5.491

5.  Promiscuous and specific bacterial symbiont acquisition in the amoeboid genus Nuclearia (Opisthokonta).

Authors:  Sebastian Dirren; Thomas Posch
Journal:  FEMS Microbiol Ecol       Date:  2016-05-18       Impact factor: 4.194

6.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

7.  Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.

Authors:  Rochelle M Soo; Ben J Woodcroft; Donovan H Parks; Gene W Tyson; Philip Hugenholtz
Journal:  PeerJ       Date:  2015-05-21       Impact factor: 2.984

8.  Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters.

Authors:  Huan Chen; Lauren M Brinkac; Pamela Mishra; Nan Li; Despoina S Lymperopoulou; Tamar L Dickerson; Nadine Gordon-Bradley; Henry N Williams; Jonathan H Badger
Journal:  Stand Genomic Sci       Date:  2015-03-24

9.  The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.

Authors:  Sara C Di Rienzi; Itai Sharon; Kelly C Wrighton; Omry Koren; Laura A Hug; Brian C Thomas; Julia K Goodrich; Jordana T Bell; Timothy D Spector; Jillian F Banfield; Ruth E Ley
Journal:  Elife       Date:  2013-10-01       Impact factor: 8.140

10.  A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.

Authors:  Lisa C Crossman; Huan Chen; Ana-M Cerdeño-Tárraga; Karen Brooks; Michael A Quail; Silvia A Pineiro; Laura Hobley; R Elizabeth Sockett; Stephen D Bentley; Julian Parkhill; Henry N Williams; O Colin Stine
Journal:  ISME J       Date:  2012-09-06       Impact factor: 10.302

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  11 in total

1.  Phylogenomics of the Phylum Proteobacteria: Resolving the Complex Relationships.

Authors:  Vaibhav Sharma; Amit Vashishtha; Arsha Liz M Jos; Akshita Khosla; Nirmegh Basu; Rishabh Yadav; Amit Bhatt; Akshanshi Gulani; Pushpa Singh; Sanidhya Lakhera; Mansi Verma
Journal:  Curr Microbiol       Date:  2022-06-15       Impact factor: 2.188

2.  Potential Control of Potato Soft Rot Disease by the Obligate Predators Bdellovibrio and Like Organisms.

Authors:  Daniel Youdkes; Yael Helman; Saul Burdman; Ofra Matan; Edouard Jurkevitch
Journal:  Appl Environ Microbiol       Date:  2020-03-02       Impact factor: 4.792

3.  Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica.

Authors:  Alexandra Pitt; Johanna Schmidt; Elke Lang; William B Whitman; Tanja Woyke; Martin W Hahn
Journal:  Int J Syst Evol Microbiol       Date:  2018-04-24       Impact factor: 2.747

4.  Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north-south cross-section across Europe.

Authors:  Matthias Hoetzinger; Johanna Schmidt; Alexandra Pitt; Ulrike Koll; Elke Lang; Martin W Hahn
Journal:  Int J Syst Evol Microbiol       Date:  2018-11-22       Impact factor: 2.747

Review 5.  Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

Authors:  Ryosuke Nakai
Journal:  Microbes Environ       Date:  2020       Impact factor: 2.912

6.  BALOs Improved Gut Microbiota Health in Postlarval Shrimp (Litopenaeus vannamei) After Being Subjected to Salinity Reduction Treatment.

Authors:  Qingqing Cao; Farhana Najnine; Hongcao Han; Bing Wu; Junpeng Cai
Journal:  Front Microbiol       Date:  2020-06-30       Impact factor: 5.640

7.  A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes.

Authors:  Sheila Podell; Jessica M Blanton; Aaron Oliver; Michelle A Schorn; Vinayak Agarwal; Jason S Biggs; Bradley S Moore; Eric E Allen
Journal:  Microbiome       Date:  2020-06-23       Impact factor: 14.650

8.  Fluviispira multicolorata gen. nov., sp. nov. and Silvanigrella paludirubra sp. nov., isolated from freshwater habitats.

Authors:  Alexandra Pitt; Ulrike Koll; Johanna Schmidt; Martin W Hahn
Journal:  Int J Syst Evol Microbiol       Date:  2020-03       Impact factor: 2.747

9.  Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments.

Authors:  Da-Shuai Mu; Shuo Wang; Qi-Yun Liang; Zhao-Zhong Du; Renmao Tian; Yang Ouyang; Xin-Peng Wang; Aifen Zhou; Ya Gong; Guan-Jun Chen; Joy Van Nostrand; Yunfeng Yang; Jizhong Zhou; Zong-Jun Du
Journal:  Microbiome       Date:  2020-08-31       Impact factor: 14.650

Review 10.  Insight into the Possible Use of the Predator Bdellovibrio bacteriovorus as a Probiotic.

Authors:  Giulia Bonfiglio; Bruna Neroni; Giulia Radocchia; Massimiliano Marazzato; Fabrizio Pantanella; Serena Schippa
Journal:  Nutrients       Date:  2020-07-28       Impact factor: 5.717

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