Literature DB >> 28768809

2-Hydroxyisobutyrylation on histone H4K8 is regulated by glucose homeostasis in Saccharomyces cerevisiae.

Jing Huang1,2, Zhouqing Luo1,2, Wantao Ying3, Qichen Cao3, He Huang4, Junkai Dong1, Qingyu Wu1, Yingming Zhao4, Xiaohong Qian5, Junbiao Dai6,2.   

Abstract

New types of modifications of histones keep emerging. Recently, histone H4K8 2-hydroxyisobutyrylation (H4K8hib) was identified as an evolutionarily conserved modification. However, how this modification is regulated within a cell is still elusive, and the enzymes adding and removing 2-hydroxyisobutyrylation have not been found. Here, we report that the amount of H4K8hib fluctuates in response to the availability of carbon source in Saccharomyces cerevisiae and that low-glucose conditions lead to diminished modification. The removal of the 2-hydroxyisobutyryl group from H4K8 is mediated by the histone lysine deacetylase Rpd3p and Hos3p in vivo. In addition, eliminating modifications at this site by alanine substitution alters transcription in carbon transport/metabolism genes and results in a reduced chronological life span (CLS). Furthermore, consistent with the glucose-responsive H4K8hib regulation, proteomic analysis revealed that a large set of proteins involved in glycolysis/gluconeogenesis are modified by lysine 2-hydroxyisobutyrylation. Cumulatively, these results established a functional and regulatory network among Khib, glucose metabolism, and CLS.

Entities:  

Keywords:  chronological life span; histone deacetylase; lysine 2-hydroxyisobutyrylation; lysine acetylation; protein posttranslational modifications

Mesh:

Substances:

Year:  2017        PMID: 28768809      PMCID: PMC5565412          DOI: 10.1073/pnas.1700796114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

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4.  Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.

Authors:  Yuanyuan Li; Benjamin R Sabari; Tatyana Panchenko; Hong Wen; Dan Zhao; Haipeng Guan; Liling Wan; He Huang; Zhanyun Tang; Yingming Zhao; Robert G Roeder; Xiaobing Shi; C David Allis; Haitao Li
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

5.  Rewiring AMPK and mitochondrial retrograde signaling for metabolic control of aging and histone acetylation in respiratory-defective cells.

Authors:  R Magnus N Friis; John Paul Glaves; Tao Huan; Liang Li; Brian D Sykes; Michael C Schultz
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6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

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Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

7.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

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Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

8.  Identification of lysine succinylation as a new post-translational modification.

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Journal:  Nat Chem Biol       Date:  2010-12-12       Impact factor: 15.040

9.  Studies on the function of yeast phosphofructokinase subunits by in vitro mutagenesis.

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Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

10.  Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase.

Authors:  Jintang Du; Yeyun Zhou; Xiaoyang Su; Jiu Jiu Yu; Saba Khan; Hong Jiang; Jungwoo Kim; Jimin Woo; Jun Huyn Kim; Brian Hyun Choi; Bin He; Wei Chen; Sheng Zhang; Richard A Cerione; Johan Auwerx; Quan Hao; Hening Lin
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

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  26 in total

1.  Systematic Identification of Lysine 2-hydroxyisobutyrylated Proteins in Proteus mirabilis.

Authors:  Hanyang Dong; Zhenchang Guo; Wei Feng; Tao Zhang; Guijin Zhai; Agata Palusiak; Antoni Rozalski; Shanshan Tian; Xue Bai; Lijin Shen; Pu Chen; Quan Wang; Enguo Fan; Zhongyi Cheng; Kai Zhang
Journal:  Mol Cell Proteomics       Date:  2018-01-03       Impact factor: 5.911

2.  TmcA functions as a lysine 2-hydroxyisobutyryltransferase to regulate transcription.

Authors:  Hanyang Dong; Yujie Zhao; Changfen Bi; Yue Han; Jianji Zhang; Xue Bai; Guijin Zhai; Hui Zhang; Shanshan Tian; Deqing Hu; Liyan Xu; Kai Zhang
Journal:  Nat Chem Biol       Date:  2021-12-13       Impact factor: 15.040

Review 3.  Post-Translational Modifications of Histones Are Versatile Regulators of Fungal Development and Secondary Metabolism.

Authors:  Aurelie Etier; Fabien Dumetz; Sylvain Chéreau; Nadia Ponts
Journal:  Toxins (Basel)       Date:  2022-04-29       Impact factor: 5.075

4.  Histone Methylation Is Required for Virulence, Conidiation, and Multi-Stress Resistance of Alternaria alternata.

Authors:  Shuai Meng; Suya Huang; Jinhua Liu; Yunpeng Gai; Min Li; Shuo Duan; Shuting Zhang; Xuepeng Sun; Qi Yang; Yuchun Wang; Kai Xu; Haijie Ma
Journal:  Front Microbiol       Date:  2022-06-16       Impact factor: 6.064

5.  Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds.

Authors:  Xiaoxi Meng; Shihai Xing; Loida M Perez; Xiaojun Peng; Qingyong Zhao; Edilberto D Redoña; Cailin Wang; Zhaohua Peng
Journal:  Sci Rep       Date:  2017-12-13       Impact factor: 4.379

6.  Proteome-Wide Analyses Reveal the Diverse Functions of Lysine 2-Hydroxyisobutyrylation in Oryza sativa.

Authors:  Chao Xue; Zhongying Qiao; Xu Chen; Penghui Cao; Kai Liu; Shuai Liu; Lu Ye; Zhiyun Gong
Journal:  Rice (N Y)       Date:  2020-06-05       Impact factor: 4.783

7.  Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves.

Authors:  Bo Feng; Shengdong Li; Zongshuai Wang; Fang Cao; Zheng Wang; Geng Li; Kaichang Liu
Journal:  PLoS One       Date:  2021-06-17       Impact factor: 3.240

8.  Co-occurrence of Protein Crotonylation and 2-Hydroxyisobutyrylation in the Proteome of End-Stage Renal Disease.

Authors:  Jingjing Dong; Yixi Li; Fengping Zheng; Wenbiao Chen; Shaoying Huang; Xianqing Zhou; Kang Wang; Wanxia Cai; HaiPing Liu; Lianghong Yin; Qiang Li; Donge Tang; Yong Dai
Journal:  ACS Omega       Date:  2021-06-10

9.  Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang).

Authors:  Tong Qi; Jinping Li; Huifang Wang; Xiaofan Han; Junrong Li; Jinzhe Du
Journal:  BMC Genomics       Date:  2021-07-15       Impact factor: 3.969

Review 10.  Reciprocal Regulation of Metabolic Reprogramming and Epigenetic Modifications in Cancer.

Authors:  Xilan Yu; Rui Ma; Yinsheng Wu; Yansheng Zhai; Shanshan Li
Journal:  Front Genet       Date:  2018-09-19       Impact factor: 4.599

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