Literature DB >> 28766713

Comparison between Temperature Gradient Gel Electrophoresis of Bacterial 16S rDNA and Diatom Test for Diagnosis of Drowning.

Nozomi Idota1, Hajime Tsuboi1, Marin Takaso1, Misa Tojo1, Takako Kinebuchi1, Mami Nakamura1, Hiroaki Ichioka1, Kaori Shintani-Ishida1, Hiroshi Ikegaya1.   

Abstract

When a body is discovered in water, it is difficult to conclude whether the cause of death was drowning, even today. Although diatom testing by the digestive method is classical, we hypothesized that aquatic bacteria, as well as diatoms, might be detected in drowned bodies, and conducted temperature gradient gel electrophoresis (TGGE)-targeting 16S rDNA. DNA was extracted from the site water, and from heart blood and liver samples from 27 bodies concluded as drowning deaths by autopsy and subjected to TGGE after amplification of 16S rDNA by polymerase chain reaction. We observed whether the feature point of each 16S rDNA from the site water and blood or liver samples matched. Considerably higher correspondence was observed in drowned bodies, and the rate was higher than that achieved with the digestive method. Moreover, TGGE is safer than the digestive method. Our study suggests that this method can aid diagnosis of drowning.
© 2017 American Academy of Forensic Sciences.

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Keywords:  16S ribosomal DNA; diatom test; digestive method; drowning; forensic science; temperature gradient gel electrophoresis

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Year:  2017        PMID: 28766713     DOI: 10.1111/1556-4029.13606

Source DB:  PubMed          Journal:  J Forensic Sci        ISSN: 0022-1198            Impact factor:   1.832


  1 in total

1.  High-throughput 16S rDNA sequencing assisting in the detection of bacterial pathogen candidates: a fatal case of necrotizing fasciitis in a child.

Authors:  Dong Qu; Dong-Fang Qiao; Michael Klintschar; Zhi Qu; Xia Yue
Journal:  Int J Legal Med       Date:  2020-09-08       Impact factor: 2.686

  1 in total

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