Literature DB >> 28765786

A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting.

Roland C Wilhelm1, Erick Cardenas1, Hilary Leung1, Kendra Maas1, Martin Hartmann2, Aria Hahn1, Steven Hallam1, William W Mohn1.   

Abstract

The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and soil necessitates a comprehensive approach to understand the role of microbial processes in managed forest ecosystems. Here, we describe a curated collection of well replicated, multi-faceted data from eighteen reforested sites in six different North American ecozones within the Long-term Soil Productivity (LTSP) Study, without detailed analysis of results or discussion. The experiments were designed to contrast microbial community composition and function among forest soils from harvested treatment plots with varying intensities of organic matter removal. The collection includes 724 bacterial (16S) and 658 fungal (ITS2) amplicon libraries, 133 shotgun metagenomic libraries as well as stable isotope probing amplicon libraries capturing the effects of harvesting on hemicellulolytic and cellulolytic populations. This collection serves as a foundation for the LTSP Study and other studies of the ecology of forest soil and forest disturbance.

Entities:  

Keywords:  Forest ecology; Metagenomics; Molecular ecology; Soil microbiology

Mesh:

Year:  2017        PMID: 28765786      PMCID: PMC5525643          DOI: 10.1038/sdata.2017.92

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  15 in total

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3.  Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests.

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9.  Sensitive, Efficient Quantitation of 13C-Enriched Nucleic Acids via Ultrahigh-Performance Liquid Chromatography-Tandem Mass Spectrometry for Applications in Stable Isotope Probing.

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10.  DNA stable-isotope probing.

Authors:  Josh D Neufeld; Jyotsna Vohra; Marc G Dumont; Tillmann Lueders; Mike Manefield; Michael W Friedrich; J Colin Murrell
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  6 in total

1.  Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities.

Authors:  Roland C Wilhelm; Erick Cardenas; Kendra R Maas; Hilary Leung; Larisa McNeil; Shannon Berch; William Chapman; Graeme Hope; J M Kranabetter; Stephane Dubé; Matt Busse; Robert Fleming; Paul Hazlett; Kara L Webster; David Morris; D Andrew Scott; William W Mohn
Journal:  ISME J       Date:  2017-07-28       Impact factor: 10.302

2.  Phylogenetic Reassessment, Taxonomy, and Biogeography of Codinaea and Similar Fungi.

Authors:  Martina Réblová; Miroslav Kolařík; Jana Nekvindová; Kamila Réblová; František Sklenář; Andrew N Miller; Margarita Hernández-Restrepo
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3.  GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies.

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Journal:  Sci Data       Date:  2020-07-13       Impact factor: 6.444

4.  Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing.

Authors:  Roland C Wilhelm; Rahul Singh; Lindsay D Eltis; William W Mohn
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Review 6.  Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates.

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  6 in total

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