| Literature DB >> 28763495 |
Ricardo Koroiva1,2, Mateus Pepinelli3,4, Marciel Elio Rodrigues5, Fabio de Oliveira Roque2, Aline Pedroso Lorenz-Lemke6, Sebastian Kvist3,4.
Abstract
We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of "Cerrado" and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for the collected specimens. The distinct gap between intraspecific (0-2%) and interspecific variation (15% and above) in COI, and resulting separation of Barcode Index Numbers (BIN), allowed for successful identification of specimens in 94% of cases. The 6% fail rate was due to a shared BIN between two separate nominal species. DNA barcoding, based on COI, thus seems to be a reliable and efficient tool for identifying Neotropical odonate specimens down to the species level. These results underscore the utility of DNA barcoding to aid specimen identification in diverse biological hotspots, areas that require urgent action regarding taxonomic surveys and biodiversity conservation.Entities:
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Year: 2017 PMID: 28763495 PMCID: PMC5538745 DOI: 10.1371/journal.pone.0182283
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Geographical location of the sampling sites for Neotropical odonate taxa in Brazil.
Red lines are rivers from the Plata basin.
Collection sites from the Upper Plata basin.
| Number | Country | State | Municipality | Exact site | Latitude | Longitude |
|---|---|---|---|---|---|---|
| 1 | Brazil | Parana | Cascavel | Rio das Antas | -25.2607 | -53.3653 |
| 2 | Brazil | Mato Grosso do Sul | Dourados | Córrego Azulão | -22.2 | -55.18 |
| 3 | Brazil | Mato Grosso do Sul | Bonito | Córrego Cabana | -21.1706 | -56.4414 |
| 4 | Brazil | Mato Grosso do Sul | Jardim | -21.433 | -56.442 | |
| 5 | Brazil | Mato Grosso do Sul | Bela Vista | Rio Margarida | -21.6799 | -56.7624 |
| 6 | Brazil | Mato Grosso do Sul | Bela Vista | Córrego Feio | -21.6805 | -56.7643 |
| 7 | Brazil | Mato Grosso do Sul | Alto Caracol | Rio Divisa | -21.7125 | -56.8377 |
| 8 | Brazil | Mato Grosso do Sul | Bodoquena | Córrego Nascente da Gruta | -20.7267 | -56.8509 |
| 9 | Brazil | Mato Grosso do Sul | Bodoquena | Córrego Ouro Verde | -20.7172 | -56.8529 |
| 10 | Brazil | Mato Grosso do Sul | Bodoquena | Córrego Oco do Sapo | -20.7 | -56.8608 |
| 11 | Brazil | Mato Grosso do Sul | Bodoquena | Córrego da Casa | -20.7141 | -56.8678 |
| 12 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego Sacuri | -21.6352 | -56.9338 |
| 13 | Brazil | Mato Grosso do Sul | Alto Caracol | Rio Espinilho | -21.6255 | -56.9381 |
| 14 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego da Laje | -21.6897 | -56.9382 |
| 15 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego da Estrada | -21.6557 | -56.9384 |
| 16 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego das Pedras | -21.6933 | -56.9445 |
| 17 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego Coqueiro | -21.6941 | -56.9495 |
| 18 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego do Cachorro | -21.6494 | -56.9508 |
| 19 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego Morro do Cateto | -21.678 | -56.9546 |
| 20 | Brazil | Mato Grosso do Sul | Alto Caracol | Rio Perdido | -21.6413 | -56.9614 |
| 21 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego da Volta | -21.6577 | -56.9676 |
| 22 | Brazil | Mato Grosso do Sul | Alto Caracol | Córrego Sujo | -21.6554 | -56.9704 |
| 23 | Brazil | Mato Grosso do Sul | Porto Murtinho | Córrego APA | -22.1702 | -57.5183 |
| 24 | Brazil | Mato Grosso do Sul | Porto Murtinho | -22.1536 | -57.5435 | |
| 25 | Brazil | Mato Grosso do Sul | Porto Murtinho | Córrego Jango Fundo | -22.0824 | -57.5785 |
| 26 | Brazil | Mato Grosso do Sul | Porto Murtinho | Córrego Cristalino | -21.9535 | -57.5991 |
| 27 | Brazil | Mato Grosso do Sul | Porto Murtinho | -21.6981 | -57.7586 | |
| 28 | Brazil | Mato Grosso do Sul | Porto Murtinho | Córrego Pão de Açúcar | -21.4572 | -57.8989 |
Fig 2Mid-point rooted neighbor-joining tree based on COI sequences for the entire dataset of Neotropical odonates.
K2P distances of COI within species studied.
BIN, Barcode Index Number, an identification number for barcoding clusters recognized by BOLD within the species; N, number of barcode sequences; Mean(%) = average of intraspecific genetic distance value (expressed as percent); Max(%) = maximum intraspecific genetic distance value (expressed as percent); Nearest neighbour = most closely related species retrieved in the NJ tree. DNN = lowest genetic distance to the nearest neighbor (expressed as percent).
| Suborder and Family | Species | BIN (BOLD) | N | Mean (%) | Max (%) | Nearest neighbour | DNN (%) |
|---|---|---|---|---|---|---|---|
| Anisoptera | |||||||
| Libellulidae | |||||||
| AAY5948 | 1 | N/A | N/A | 15.69 | |||
| AAY5938 | 7 | 0.15 | 0.3 | 13.46 | |||
| AAY7421 | 2 | 0.15 | 0.15 | 16.48 | |||
| ACA0824 | 2 | 0 | 0 | 2.33 | |||
| ACA0824 | 1 | N/A | N/A | 2.33 | |||
| AAY5962 | 3 | 0.41 | 0.46 | 14.21 | |||
| AAY5966 | 14 | 0.9 | 1.86 | 7.45 | |||
| AAY5970 | 6 | 0.15 | 0.46 | 7.45 | |||
| AAG7268 | 7 | 0.83 | 1.39 | 14.02 | |||
| AAY5839 | 2 | 1.86 | 1.86 | 16.05 | |||
| AAE3343 | 4 | 0.62 | 0.92 | 14.56 | |||
| AAY5838 | 1 | N/A | N/A | 14.05 | |||
| AAY5968 | 3 | 0.41 | 0.61 | 12.6 | |||
| AAY5779 | 2 | 0 | 0 | 13.23 | |||
| AAY6185 | 2 | 0.46 | 0.46 | 12.6 | |||
| AAY7423 | 5 | 0.09 | 0.15 | 9.42 | |||
| AAY7422 | 5 | 0.58 | 0.92 | 9.42 | |||
| AAH6890 | 4 | 0.71 | 0.92 | 15.69 | |||
| AAY5969 | 1 | N/A | N/A | 15.1 | |||
| Aeshnidae | |||||||
| ACA3440 | 1 | N/A | N/A | 17.84 | |||
| Zygoptera | |||||||
| Calopterygidae | |||||||
| AAY5702 | 12 | 0.07 | 0.15 | 12.25 | |||
| AAY6022 | 3 | 0 | 0 | 12.76 | |||
| AAY6023 | 1 | N/A | N/A | 12.25 | |||
| Coenagrionidae | |||||||
| ABX9825 | 2 | 0.31 | 0.31 | 15.02 | |||
| AAY7620 | 5 | 0.31 | 0.61 | 15.02 | |||
| AAY7616 | 2 | 0 | 0 | 12.91 | |||
| AAY5710 | 1 | N/A | N/A | 8.24 | |||
| AAY5928 | 1 | N/A | N/A | 1.54 | |||
| AAY5929 | 2 | N/A | N/A | 12.62 | |||
| AAY5926 | 4 | 0.41 | 0.77 | 12.54 | |||
| AAY5925 | 2 | 0.15 | 0.15 | 12.54 | |||
| AAY5928 | 4 | 0 | 0 | 1.54 | |||
| AAY5711 | 3 | 0.1 | 0.15 | 8.24 | |||
| AAY7411 | 5 | 0 | 0 | 4.89 | |||
| AAY6021 | 2 | 1.54 | 1.54 | 4.89 | |||
| AAY7454 | 4 | 0.23 | 0.31 | 12.91 | |||
| Heteragrionidae | |||||||
| AAY6230 | 3 | 0.1 | 0.15 | 19.1 | |||
| Lestidae | |||||||
| AAY5814 | 1 | N/A | N/A | 14.59 |
Fig 3Subset of the neighbor-joining tree from Fig 2 showing the case of discordance between current taxonomy and BINs.
Sequences of Argia tamoyo shares a BIN with those of Argia botacudo.
Fig 4Frequency distribution of intraspecific (red) and interspecific (blue) genetic divergence in the sampled Neotropical odonates.
Pairwise genetic distances were calculated using Kimura two-parameter (K2P) distances (see text for further details).